LmxM.30.0440b | hypothetical protein

UniProt_ID:

Computed_GO_Component_IDs: GO:0005622
Computed_GO_Components: intracellular
Computed_GO_Function_IDs: GO:0004198
Computed_GO_Functions: calcium-dependent cysteine-type endopeptidase activity
Computed_GO_Process_IDs: GO:0006508
Computed_GO_Processes: proteolysis
Curated_GO_Component_IDs:
Curated_GO_Components:
Curated_GO_Function_IDs:
Curated_GO_Functions:
Curated_GO_Processes:

	_ID	Prediction	OTHER	SP	mTP	CS_Position
	LmxM.30.0440b	OTHER	0.998456	0.000497	0.001047

No Results

Fasta :-
>LmxM.30.0440b MCAVAIMAENEAMVRSIFAQGSPEEKAVGAYRVLISKNGWWHILILDDYLPTFNRMPVFA RSYDDPAEVWASLLQKAYAKVHGSYAAITGGDALQALADLSGSPMCRFDKEWEEATADAR KADTLANALVQLSRSGACVVLSTPGHNSESYLGGRQARDSGAFRARYEDAGLHPGYTYSL ERVVIVEECGTLLFKVRNPWRSSNKWSGAWSYGSRQWDENQDACLLCGAQKDPEDGSFWM CWSDAIQYFDGGGALFSIPDATDYRVKGVFCKTIPSTVLEITASESTRVLFTLSQPDKRG VDRKEGAALFAPIMLTVSKEDGDVQQVQKNTSWNPTMPSEEFNFVVGRDVAMWFTLEAEE TYLLVPRIHPKGVKSNYDRPYVIGIISAEKLEGNVQVEAKQIHSDSAVFTNYIAYKSEEL PSVEAENQVRLPGMAPVTYVSTKVI
Download Fasta

MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/302 Sequence name : 302 Sequence length : 445 VALUES OF COMPUTED PARAMETERS Coef20 : 4.588 CoefTot : 0.423 ChDiff : -13 ZoneTo : 8 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.594 1.306 0.063 0.438 MesoH : -0.598 0.173 -0.338 0.207 MuHd_075 : 29.348 17.383 7.675 6.266 MuHd_095 : 15.931 9.855 4.642 3.855 MuHd_100 : 13.065 8.224 4.086 3.395 MuHd_105 : 14.130 8.793 2.477 3.651 Hmax_075 : 18.400 18.800 3.850 6.200 Hmax_095 : 12.862 16.363 2.897 5.136 Hmax_100 : 12.700 16.200 2.884 5.580 Hmax_105 : 12.400 16.000 1.214 5.340 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8956 0.1044 DFMC : 0.9263 0.0737

##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 445 LmxM.30.0440b MCAVAIMAENEAMVRSIFAQGSPEEKAVGAYRVLISKNGWWHILILDDYLPTFNRMPVFARSYDDPAEVWASLLQKAYAK 80 VHGSYAAITGGDALQALADLSGSPMCRFDKEWEEATADARKADTLANALVQLSRSGACVVLSTPGHNSESYLGGRQARDS 160 GAFRARYEDAGLHPGYTYSLERVVIVEECGTLLFKVRNPWRSSNKWSGAWSYGSRQWDENQDACLLCGAQKDPEDGSFWM 240 CWSDAIQYFDGGGALFSIPDATDYRVKGVFCKTIPSTVLEITASESTRVLFTLSQPDKRGVDRKEGAALFAPIMLTVSKE 320 DGDVQQVQKNTSWNPTMPSEEFNFVVGRDVAMWFTLEAEETYLLVPRIHPKGVKSNYDRPYVIGIISAEKLEGNVQVEAK 400 QIHSDSAVFTNYIAYKSEELPSVEAENQVRLPGMAPVTYVSTKVI 480 ................................................................................ 80 .............................................................................P.. 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ............................................. 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ LmxM.30.0440b 15 ENEAMVR|SI 0.141 . LmxM.30.0440b 26 QGSPEEK|AV 0.107 . LmxM.30.0440b 32 KAVGAYR|VL 0.089 . LmxM.30.0440b 37 YRVLISK|NG 0.059 . LmxM.30.0440b 55 YLPTFNR|MP 0.068 . LmxM.30.0440b 61 RMPVFAR|SY 0.175 . LmxM.30.0440b 76 WASLLQK|AY 0.079 . LmxM.30.0440b 80 LQKAYAK|VH 0.064 . LmxM.30.0440b 107 SGSPMCR|FD 0.133 . LmxM.30.0440b 110 PMCRFDK|EW 0.159 . LmxM.30.0440b 120 EATADAR|KA 0.098 . LmxM.30.0440b 121 ATADARK|AD 0.074 . LmxM.30.0440b 134 ALVQLSR|SG 0.104 . LmxM.30.0440b 155 ESYLGGR|QA 0.111 . LmxM.30.0440b 158 LGGRQAR|DS 0.595 *ProP* LmxM.30.0440b 164 RDSGAFR|AR 0.089 . LmxM.30.0440b 166 SGAFRAR|YE 0.192 . LmxM.30.0440b 182 YTYSLER|VV 0.111 . LmxM.30.0440b 195 CGTLLFK|VR 0.054 . LmxM.30.0440b 197 TLLFKVR|NP 0.081 . LmxM.30.0440b 201 KVRNPWR|SS 0.142 . LmxM.30.0440b 205 PWRSSNK|WS 0.077 . LmxM.30.0440b 215 AWSYGSR|QW 0.130 . LmxM.30.0440b 231 LLCGAQK|DP 0.081 . LmxM.30.0440b 265 PDATDYR|VK 0.087 . LmxM.30.0440b 267 ATDYRVK|GV 0.073 . LmxM.30.0440b 272 VKGVFCK|TI 0.066 . LmxM.30.0440b 288 TASESTR|VL 0.101 . LmxM.30.0440b 298 TLSQPDK|RG 0.064 . LmxM.30.0440b 299 LSQPDKR|GV 0.491 . LmxM.30.0440b 303 DKRGVDR|KE 0.138 . LmxM.30.0440b 304 KRGVDRK|EG 0.100 . LmxM.30.0440b 319 IMLTVSK|ED 0.074 . LmxM.30.0440b 329 DVQQVQK|NT 0.073 . LmxM.30.0440b 348 FNFVVGR|DV 0.179 . LmxM.30.0440b 367 TYLLVPR|IH 0.087 . LmxM.30.0440b 371 VPRIHPK|GV 0.098 . LmxM.30.0440b 374 IHPKGVK|SN 0.072 . LmxM.30.0440b 379 VKSNYDR|PY 0.109 . LmxM.30.0440b 390 GIISAEK|LE 0.062 . LmxM.30.0440b 400 NVQVEAK|QI 0.076 . LmxM.30.0440b 416 TNYIAYK|SE 0.073 . LmxM.30.0440b 430 EAENQVR|LP 0.094 . LmxM.30.0440b 443 VTYVSTK|VI 0.072 . ____________________________^_________________

Fasta :-
>LmxM.30.0440b ATGTGCGCCGTGGCCATCATGGCGGAGAATGAGGCGATGGTCCGCAGTATTTTCGCACAG GGCTCGCCGGAGGAGAAGGCGGTCGGTGCGTACCGCGTGCTGATCAGCAAAAACGGCTGG TGGCACATCCTCATTCTGGACGACTACTTGCCCACGTTCAACCGCATGCCCGTGTTTGCG CGCTCGTACGACGATCCGGCGGAGGTGTGGGCCTCGTTGCTGCAAAAAGCGTATGCGAAG GTGCACGGTTCCTATGCCGCGATCACTGGCGGCGACGCTCTACAGGCTCTCGCCGACTTG AGCGGCTCGCCGATGTGCCGTTTTGACAAGGAGTGGGAGGAGGCAACGGCGGACGCGAGA AAGGCGGACACGCTGGCGAATGCGCTGGTGCAGCTTTCCCGCTCTGGCGCCTGCGTTGTG CTCAGCACTCCAGGTCACAATTCAGAGAGCTACCTGGGCGGCCGTCAGGCGAGAGATTCG GGGGCCTTCCGTGCCCGCTACGAGGACGCCGGTTTACATCCCGGCTACACGTACTCTTTA GAGCGCGTTGTGATTGTCGAGGAGTGCGGTACCCTGCTGTTCAAGGTACGCAACCCTTGG CGCTCATCGAACAAGTGGAGTGGCGCATGGAGTTACGGTTCCAGGCAGTGGGATGAGAAT CAGGATGCCTGCCTCCTCTGCGGCGCCCAGAAGGACCCGGAGGATGGCAGCTTCTGGATG TGCTGGAGTGACGCCATCCAGTACTTCGACGGAGGCGGTGCTTTGTTTTCGATCCCCGAC GCGACGGACTACCGTGTTAAGGGGGTGTTTTGCAAGACTATCCCAAGCACGGTTCTTGAG ATCACGGCCTCAGAGTCCACCCGGGTGCTTTTCACCCTCTCGCAACCCGACAAGCGCGGC GTGGACCGCAAGGAGGGCGCGGCGCTCTTTGCTCCGATCATGTTGACCGTGTCCAAGGAG GATGGCGACGTACAGCAGGTGCAGAAGAACACCAGCTGGAACCCGACAATGCCCTCCGAG GAGTTCAACTTTGTTGTTGGCCGCGATGTCGCCATGTGGTTCACGCTGGAGGCCGAGGAG ACGTACCTTCTCGTGCCACGCATACACCCAAAGGGCGTCAAGAGCAACTACGATCGACCG TACGTGATTGGCATAATATCAGCAGAGAAGCTGGAGGGCAACGTGCAGGTGGAAGCGAAG CAGATTCACAGCGACTCGGCGGTGTTCACGAACTATATCGCCTACAAATCGGAGGAGCTG CCGTCGGTCGAGGCGGAGAACCAGGTACGGCTTCCTGGCATGGCCCCCGTGACGTACGTG TCCACCAAGGTGATTTGA
Download Fasta

Fasta :-

MCAVAIMAENEAMVRSIFAQGSPEEKAVGAYRVLISKNGWWHILILDDYLPTFNRMPVFA RSYDDPAEVWASLLQKAYAKVHGSYAAITGGDALQALADLSGSPMCRFDKEWEEATADAR KADTLANALVQLSRSGACVVLSTPGHNSESYLGGRQARDSGAFRARYEDAGLHPGYTYSL ERVVIVEECGTLLFKVRNPWRSSNKWSGAWSYGSRQWDENQDACLLCGAQKDPEDGSFWM CWSDAIQYFDGGGALFSIPDATDYRVKGVFCKTIPSTVLEITASESTRVLFTLSQPDKRG VDRKEGAALFAPIMLTVSKEDGDVQQVQKNTSWNPTMPSEEFNFVVGRDVAMWFTLEAEE TYLLVPRIHPKGVKSNYDRPYVIGIISAEKLEGNVQVEAKQIHSDSAVFTNYIAYKSEEL PSVEAENQVRLPGMAPVTYVSTKVI

Calpain large subunit, catalytic domain (domain II)

No Results

	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method
	LmxM.30.0440b	318 S	MLTVSKEDG	0.998	unsp	LmxM.30.0440b	318 S	MLTVSKEDG	0.998	unsp	LmxM.30.0440b	318 S	MLTVSKEDG	0.998	unsp	LmxM.30.0440b	375 S	KGVKSNYDR	0.991	unsp	LmxM.30.0440b	22 S	FAQGSPEEK	0.995	unsp	LmxM.30.0440b	62 S	VFARSYDDP	0.993	unsp

LmxM.30.0440b | hypothetical protein

ID's

UniProt_ID:

GEO Functions

Computed_GO_Component_IDs: GO:0005622

Computed_GO_Components: intracellular

Computed_GO_Function_IDs: GO:0004198

Computed_GO_Functions: calcium-dependent cysteine-type endopeptidase activity

Computed_GO_Process_IDs: GO:0006508

Computed_GO_Processes: proteolysis

Curated_GO_Component_IDs:

Curated_GO_Components:

Curated_GO_Function_IDs:

Curated_GO_Functions:

Curated_GO_Processes:

Subcellular Localization

Targetp

Signalp

Fasta :-

Mitoprot

ProPeptide Prediction

Sequence

Nucleotide sequence

Fasta :-

Protein sequence

Fasta :-

Domains

Calpain large subunit, catalytic domain (domain II)

Structure

Post Translational Modifications

N_Linked Glycosylation

O_Linked Glycosylation

Phosphorylation

Protein-Protein Interaction

String

Literature

PubMed

Google Scholar

Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India