LmxM.30.0460g | hypothetical protein

_IDPredictionOTHERSPmTPCS_Position
LmxM.30.0460gOTHER0.7434220.0003390.256239
No Results

  • Fasta :-

    >LmxM.30.0460g MVRQFVIPRVKLLKIRNPWGSGGEWTGAWGKNSTGWQKHSLVRRSCKPSKVSDGTFWMEW RDAVQFFEGGGVCMVKKAWYQYRFPGQFIGIIPSVVLKIELRKKQKLLFTLSQKDRRLQN PDDPDQLYKGLLISVTGHNAQKGTQQIVALSTDNPEVHPPEKYEYIVARDVGLELELDPT KGPFYVIPRIMTTNQNGPKDFTLGMLAPNKSTARGLRVSFVHLPDTCPTLRNVVSFPMNG EAATHVRFQYKKRGGAPRVKAGITVFDATHVTETYLHPQ
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/331 Sequence name : 331 Sequence length : 279 VALUES OF COMPUTED PARAMETERS Coef20 : 4.304 CoefTot : -2.133 ChDiff : 17 ZoneTo : 52 KR : 11 DE : 1 CleavSite : 13 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.524 1.241 -0.056 0.543 MesoH : -0.836 -0.023 -0.479 0.101 MuHd_075 : 33.927 20.786 9.711 7.168 MuHd_095 : 33.689 16.712 8.758 6.189 MuHd_100 : 31.335 14.190 7.593 6.251 MuHd_105 : 29.782 15.202 8.275 6.530 Hmax_075 : 10.383 8.517 1.722 2.707 Hmax_095 : 9.900 4.300 -1.489 4.050 Hmax_100 : 11.100 1.400 -0.630 4.410 Hmax_105 : 12.833 1.750 0.303 2.450 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.1574 0.8426 DFMC : 0.2401 0.7599 This protein is probably imported in mitochondria. f(Ser) = 0.1154 f(Arg) = 0.0962 CMi = 0.56391 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 279 LmxM.30.0460g MVRQFVIPRVKLLKIRNPWGSGGEWTGAWGKNSTGWQKHSLVRRSCKPSKVSDGTFWMEWRDAVQFFEGGGVCMVKKAWY 80 QYRFPGQFIGIIPSVVLKIELRKKQKLLFTLSQKDRRLQNPDDPDQLYKGLLISVTGHNAQKGTQQIVALSTDNPEVHPP 160 EKYEYIVARDVGLELELDPTKGPFYVIPRIMTTNQNGPKDFTLGMLAPNKSTARGLRVSFVHLPDTCPTLRNVVSFPMNG 240 EAATHVRFQYKKRGGAPRVKAGITVFDATHVTETYLHPQ 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ....................................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmxM.30.0460g 3 ----MVR|QF 0.073 . LmxM.30.0460g 9 RQFVIPR|VK 0.072 . LmxM.30.0460g 11 FVIPRVK|LL 0.057 . LmxM.30.0460g 14 PRVKLLK|IR 0.066 . LmxM.30.0460g 16 VKLLKIR|NP 0.090 . LmxM.30.0460g 31 WTGAWGK|NS 0.065 . LmxM.30.0460g 38 NSTGWQK|HS 0.058 . LmxM.30.0460g 43 QKHSLVR|RS 0.078 . LmxM.30.0460g 44 KHSLVRR|SC 0.390 . LmxM.30.0460g 47 LVRRSCK|PS 0.177 . LmxM.30.0460g 50 RSCKPSK|VS 0.075 . LmxM.30.0460g 61 TFWMEWR|DA 0.144 . LmxM.30.0460g 76 GGVCMVK|KA 0.069 . LmxM.30.0460g 77 GVCMVKK|AW 0.136 . LmxM.30.0460g 83 KAWYQYR|FP 0.174 . LmxM.30.0460g 98 IPSVVLK|IE 0.063 . LmxM.30.0460g 102 VLKIELR|KK 0.083 . LmxM.30.0460g 103 LKIELRK|KQ 0.065 . LmxM.30.0460g 104 KIELRKK|QK 0.074 . LmxM.30.0460g 106 ELRKKQK|LL 0.065 . LmxM.30.0460g 114 LFTLSQK|DR 0.059 . LmxM.30.0460g 116 TLSQKDR|RL 0.092 . LmxM.30.0460g 117 LSQKDRR|LQ 0.115 . LmxM.30.0460g 129 DPDQLYK|GL 0.069 . LmxM.30.0460g 142 TGHNAQK|GT 0.081 . LmxM.30.0460g 162 EVHPPEK|YE 0.067 . LmxM.30.0460g 169 YEYIVAR|DV 0.265 . LmxM.30.0460g 181 LELDPTK|GP 0.062 . LmxM.30.0460g 189 PFYVIPR|IM 0.089 . LmxM.30.0460g 199 TNQNGPK|DF 0.079 . LmxM.30.0460g 210 GMLAPNK|ST 0.088 . LmxM.30.0460g 214 PNKSTAR|GL 0.124 . LmxM.30.0460g 217 STARGLR|VS 0.237 . LmxM.30.0460g 231 DTCPTLR|NV 0.084 . LmxM.30.0460g 247 EAATHVR|FQ 0.127 . LmxM.30.0460g 251 HVRFQYK|KR 0.082 . LmxM.30.0460g 252 VRFQYKK|RG 0.100 . LmxM.30.0460g 253 RFQYKKR|GG 0.205 . LmxM.30.0460g 258 KRGGAPR|VK 0.103 . LmxM.30.0460g 260 GGAPRVK|AG 0.070 . ____________________________^_________________

  • Fasta :-

    >LmxM.30.0460g ATGGTGCGCCAGTTTGTCATTCCGCGAGTGAAGCTGCTGAAGATACGCAACCCGTGGGGA AGCGGTGGCGAGTGGACCGGCGCATGGGGCAAGAACAGCACCGGGTGGCAGAAGCACTCC TTGGTGCGCCGGTCGTGCAAGCCGAGCAAGGTGAGCGATGGCACTTTCTGGATGGAGTGG AGGGACGCGGTGCAGTTCTTTGAGGGTGGCGGGGTCTGCATGGTGAAGAAGGCCTGGTAC CAGTATCGCTTCCCGGGCCAGTTCATTGGCATAATCCCGTCCGTCGTGCTAAAGATCGAA CTCAGGAAGAAGCAGAAACTACTCTTCACCCTGTCACAGAAGGACCGCCGCCTGCAGAAC CCCGACGACCCGGATCAGCTGTACAAGGGGCTGCTTATCTCCGTCACGGGGCACAACGCG CAGAAGGGCACGCAGCAGATTGTGGCCCTCAGCACCGATAACCCCGAGGTGCATCCACCA GAGAAGTACGAGTACATTGTTGCCCGCGACGTTGGCCTCGAGCTCGAGCTCGACCCCACA AAAGGCCCCTTCTACGTCATTCCGCGCATCATGACGACGAACCAAAACGGCCCGAAGGAC TTCACACTGGGCATGCTGGCACCCAACAAGTCAACCGCAAGAGGACTGCGGGTGTCTTTT GTACACCTGCCCGACACGTGCCCGACGCTCCGCAACGTGGTGTCATTCCCAATGAACGGG GAGGCGGCGACACATGTGCGATTTCAGTACAAGAAGCGCGGCGGTGCGCCCCGCGTAAAG GCGGGCATCACCGTCTTTGACGCCACCCACGTGACGGAGACGTACCTCCACCCCCAATAA
  • Download Fasta

  • Fasta :-

    MVRQFVIPRVKLLKIRNPWGSGGEWTGAWGKNSTGWQKHSLVRRSCKPSKVSDGTFWMEW RDAVQFFEGGGVCMVKKAWYQYRFPGQFIGIIPSVVLKIELRKKQKLLFTLSQKDRRLQN PDDPDQLYKGLLISVTGHNAQKGTQQIVALSTDNPEVHPPEKYEYIVARDVGLELELDPT KGPFYVIPRIMTTNQNGPKDFTLGMLAPNKSTARGLRVSFVHLPDTCPTLRNVVSFPMNG EAATHVRFQYKKRGGAPRVKAGITVFDATHVTETYLHPQ

    No Results
No Results
No Results
IDSitePeptideScoreMethod
LmxM.30.0460g45 SLVRRSCKPS0.997unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India