LmxM.30.1890 | peptidase m20/m25/m40 family-like protein

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0016787      

  • Computed_GO_Functions:  hydrolase activity      

  • Computed_GO_Process_IDs:  GO:0008152      

  • Computed_GO_Processes:  metabolic process      

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
LmxM.30.1890OTHER0.9989520.0004870.000561
No Results

  • Fasta :-

    >LmxM.30.1890 MSAGWTQVRQTVESEWEKTIVPAISAYIEVPNQSPQFDPEWATNGLQEKAFGILIDWMSA QNVQGLTYDYLTADGRTPFLLVEIAGTEPTKNTVLMYGHMDKQPPLRPWAEGLDPHKAVV RDGKLYGRGGADDGYALFAAVTAIASLQRHGVPHGRVVIMIEGGEESGSPDLDYYMERCK ERIGKVDLMVCLDSGSMNYSQVWLTTSLRGVAMGELTVQTLTESMHSGVAGGVVPDTFRI TRELLSRIEDCKTGEVLFPEAHCEMPAYAVKAAESMKTVPFKEQFAMAAGVATVPGDNVE LAIQNFWKPSLTVTGANLPDPQIAGNVIRTHTTVKLSMRLPP
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/666 Sequence name : 666 Sequence length : 342 VALUES OF COMPUTED PARAMETERS Coef20 : 3.971 CoefTot : -0.172 ChDiff : -12 ZoneTo : 12 KR : 1 DE : 0 CleavSite : 11 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.559 1.159 -0.004 0.492 MesoH : -0.462 0.245 -0.341 0.224 MuHd_075 : 23.278 8.613 3.513 3.693 MuHd_095 : 23.205 17.674 6.536 6.399 MuHd_100 : 19.755 15.479 4.914 5.190 MuHd_105 : 12.654 11.535 2.923 3.156 Hmax_075 : -1.225 1.500 -3.541 1.860 Hmax_095 : 5.200 4.800 -1.662 4.200 Hmax_100 : 5.200 4.800 -1.662 4.200 Hmax_105 : -4.100 0.600 -3.995 0.400 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.7676 0.2324 DFMC : 0.8246 0.1754
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 342 LmxM.30.1890 MSAGWTQVRQTVESEWEKTIVPAISAYIEVPNQSPQFDPEWATNGLQEKAFGILIDWMSAQNVQGLTYDYLTADGRTPFL 80 LVEIAGTEPTKNTVLMYGHMDKQPPLRPWAEGLDPHKAVVRDGKLYGRGGADDGYALFAAVTAIASLQRHGVPHGRVVIM 160 IEGGEESGSPDLDYYMERCKERIGKVDLMVCLDSGSMNYSQVWLTTSLRGVAMGELTVQTLTESMHSGVAGGVVPDTFRI 240 TRELLSRIEDCKTGEVLFPEAHCEMPAYAVKAAESMKTVPFKEQFAMAAGVATVPGDNVELAIQNFWKPSLTVTGANLPD 320 PQIAGNVIRTHTTVKLSMRLPP 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ...................... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmxM.30.1890 9 AGWTQVR|QT 0.097 . LmxM.30.1890 18 VESEWEK|TI 0.069 . LmxM.30.1890 49 TNGLQEK|AF 0.088 . LmxM.30.1890 76 YLTADGR|TP 0.066 . LmxM.30.1890 91 AGTEPTK|NT 0.062 . LmxM.30.1890 102 MYGHMDK|QP 0.056 . LmxM.30.1890 107 DKQPPLR|PW 0.114 . LmxM.30.1890 117 EGLDPHK|AV 0.065 . LmxM.30.1890 121 PHKAVVR|DG 0.093 . LmxM.30.1890 124 AVVRDGK|LY 0.168 . LmxM.30.1890 128 DGKLYGR|GG 0.078 . LmxM.30.1890 149 AIASLQR|HG 0.085 . LmxM.30.1890 156 HGVPHGR|VV 0.158 . LmxM.30.1890 178 LDYYMER|CK 0.101 . LmxM.30.1890 180 YYMERCK|ER 0.059 . LmxM.30.1890 182 MERCKER|IG 0.097 . LmxM.30.1890 185 CKERIGK|VD 0.100 . LmxM.30.1890 209 WLTTSLR|GV 0.142 . LmxM.30.1890 239 VVPDTFR|IT 0.077 . LmxM.30.1890 242 DTFRITR|EL 0.142 . LmxM.30.1890 247 TRELLSR|IE 0.095 . LmxM.30.1890 252 SRIEDCK|TG 0.068 . LmxM.30.1890 271 MPAYAVK|AA 0.080 . LmxM.30.1890 277 KAAESMK|TV 0.085 . LmxM.30.1890 282 MKTVPFK|EQ 0.074 . LmxM.30.1890 308 AIQNFWK|PS 0.070 . LmxM.30.1890 329 IAGNVIR|TH 0.106 . LmxM.30.1890 335 RTHTTVK|LS 0.061 . LmxM.30.1890 339 TVKLSMR|LP 0.080 . ____________________________^_________________

  • Fasta :-

    >LmxM.30.1890 ATGTCCGCTGGCTGGACCCAGGTGAGGCAGACGGTGGAGTCCGAGTGGGAGAAGACAATC GTGCCGGCCATCTCGGCCTACATCGAGGTGCCGAACCAGAGCCCGCAGTTCGATCCCGAG TGGGCCACCAATGGCCTGCAGGAGAAGGCCTTTGGCATCCTCATCGATTGGATGAGTGCG CAGAACGTGCAGGGGCTCACGTACGACTACCTCACCGCGGATGGCCGCACGCCGTTCCTT CTCGTCGAGATCGCCGGCACAGAGCCGACCAAGAACACGGTGCTCATGTACGGCCACATG GACAAGCAGCCGCCTCTCCGCCCGTGGGCGGAGGGTCTCGACCCCCACAAGGCGGTGGTG CGCGATGGCAAGCTGTACGGCCGCGGTGGCGCCGATGACGGCTACGCGCTCTTTGCCGCC GTCACGGCCATCGCGTCGCTGCAGCGCCACGGCGTCCCGCACGGCCGTGTCGTGATCATG ATCGAGGGCGGCGAGGAGTCGGGCAGCCCGGATCTGGACTACTACATGGAGCGCTGCAAA GAGCGCATCGGCAAGGTGGACCTCATGGTGTGCCTGGACAGCGGCAGCATGAACTACTCG CAGGTGTGGCTCACGACGTCGCTGCGCGGCGTTGCGATGGGTGAGCTGACGGTGCAGACA CTGACGGAGAGCATGCACAGTGGCGTCGCCGGCGGCGTTGTGCCGGACACGTTCCGCATC ACGCGCGAGCTCCTCAGCCGCATCGAGGACTGCAAGACGGGCGAGGTGCTGTTCCCGGAG GCCCACTGCGAGATGCCGGCCTACGCGGTCAAGGCGGCGGAGTCGATGAAGACGGTGCCG TTCAAGGAGCAGTTTGCCATGGCGGCAGGCGTGGCGACGGTGCCTGGCGACAACGTCGAG CTGGCGATTCAGAACTTTTGGAAGCCGAGCCTCACCGTGACGGGCGCCAACCTGCCGGAC CCGCAGATCGCCGGCAACGTCATCCGCACCCACACGACGGTGAAGCTTTCCATGCGCCTG CCACCCCT
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  • Fasta :-

    MSAGWTQVRQTVESEWEKTIVPAISAYIEVPNQSPQFDPEWATNGLQEKAFGILIDWMSA QNVQGLTYDYLTADGRTPFLLVEIAGTEPTKNTVLMYGHMDKQPPLRPWAEGLDPHKAVV RDGKLYGRGGADDGYALFAAVTAIASLQRHGVPHGRVVIMIEGGEESGSPDLDYYMERCK ERIGKVDLMVCLDSGSMNYSQVWLTTSLRGVAMGELTVQTLTESMHSGVAGGVVPDTFRI TRELLSRIEDCKTGEVLFPEAHCEMPAYAVKAAESMKTVPFKEQFAMAAGVATVPGDNVE LAIQNFWKPSLTVTGANLPDPQIAGNVIRTHTTVKLSMRLPP

    No Results
No Results
No Results
IDSitePeptideScoreMethod
LmxM.30.1890246 SRELLSRIED0.993unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India