LmxM.30.2020 | succinyl-diaminopimelate desuccinylase-like protein

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0016787      

  • Computed_GO_Functions:  hydrolase activity      

  • Computed_GO_Process_IDs:  GO:0008152      

  • Computed_GO_Processes:  metabolic process      

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
LmxM.30.2020OTHER0.9990380.0005030.000459
No Results

  • Fasta :-

    >LmxM.30.2020 MSAGWTQVRQTVESEWEKTIVPAISAYIEVPNQSPQFDPEWATNGLQEKAFGILIDWMSA QNVQGLTYDYLTADGRTPFLLVEIAGTEPTKNTVLMYGHMDKQPPLRPWAEGLDPHKAVV RDGKLYGRGGADDGYALFAAVTAIASLQRHGVPHGRAVIMIEGGEESGSPDLDYYMERCK ERIGKVDLMVCLDSCSMNYSQVWLTTSLRGVAMGELTVQTLTESMHSGVAGGVVPDTFRI TRELLSRIEDCKTGEVLFPEAHCEMPAYAVKAAESMKTVPFKEQFAMAAGVATVPGDNVE LAIQNFWKPSLTVTGANLPDPQIAGNVIRTHTTVKLSMRLPPLVEAEAALQAMKRILEAD PPYGAKVTFKSVGAGNGCVAPELKPWLQEVLHEGSIEAFGNTYACQGMGGAIPFIGMLID TYPEAQFVVTGLLGPQSNAHGPNEFLHIPYAKGLTYSIARIVAAHLQNTPK
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/131 Sequence name : 131 Sequence length : 471 VALUES OF COMPUTED PARAMETERS Coef20 : 3.971 CoefTot : -0.172 ChDiff : -15 ZoneTo : 12 KR : 1 DE : 0 CleavSite : 11 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.576 1.294 0.268 0.633 MesoH : 0.083 0.374 -0.237 0.338 MuHd_075 : 23.278 8.613 3.513 3.693 MuHd_095 : 23.205 17.674 6.536 6.399 MuHd_100 : 19.755 15.479 4.914 5.190 MuHd_105 : 12.654 11.535 2.923 3.156 Hmax_075 : -1.225 1.500 -3.541 1.860 Hmax_095 : 5.200 4.800 -1.662 4.200 Hmax_100 : 5.200 4.800 -1.662 4.200 Hmax_105 : -4.100 0.600 -3.995 0.400 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.5538 0.4462 DFMC : 0.6057 0.3943
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 471 LmxM.30.2020 MSAGWTQVRQTVESEWEKTIVPAISAYIEVPNQSPQFDPEWATNGLQEKAFGILIDWMSAQNVQGLTYDYLTADGRTPFL 80 LVEIAGTEPTKNTVLMYGHMDKQPPLRPWAEGLDPHKAVVRDGKLYGRGGADDGYALFAAVTAIASLQRHGVPHGRAVIM 160 IEGGEESGSPDLDYYMERCKERIGKVDLMVCLDSCSMNYSQVWLTTSLRGVAMGELTVQTLTESMHSGVAGGVVPDTFRI 240 TRELLSRIEDCKTGEVLFPEAHCEMPAYAVKAAESMKTVPFKEQFAMAAGVATVPGDNVELAIQNFWKPSLTVTGANLPD 320 PQIAGNVIRTHTTVKLSMRLPPLVEAEAALQAMKRILEADPPYGAKVTFKSVGAGNGCVAPELKPWLQEVLHEGSIEAFG 400 NTYACQGMGGAIPFIGMLIDTYPEAQFVVTGLLGPQSNAHGPNEFLHIPYAKGLTYSIARIVAAHLQNTPK 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ....................................................................... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmxM.30.2020 9 AGWTQVR|QT 0.097 . LmxM.30.2020 18 VESEWEK|TI 0.069 . LmxM.30.2020 49 TNGLQEK|AF 0.088 . LmxM.30.2020 76 YLTADGR|TP 0.066 . LmxM.30.2020 91 AGTEPTK|NT 0.062 . LmxM.30.2020 102 MYGHMDK|QP 0.056 . LmxM.30.2020 107 DKQPPLR|PW 0.114 . LmxM.30.2020 117 EGLDPHK|AV 0.065 . LmxM.30.2020 121 PHKAVVR|DG 0.093 . LmxM.30.2020 124 AVVRDGK|LY 0.168 . LmxM.30.2020 128 DGKLYGR|GG 0.078 . LmxM.30.2020 149 AIASLQR|HG 0.086 . LmxM.30.2020 156 HGVPHGR|AV 0.189 . LmxM.30.2020 178 LDYYMER|CK 0.101 . LmxM.30.2020 180 YYMERCK|ER 0.059 . LmxM.30.2020 182 MERCKER|IG 0.097 . LmxM.30.2020 185 CKERIGK|VD 0.100 . LmxM.30.2020 209 WLTTSLR|GV 0.142 . LmxM.30.2020 239 VVPDTFR|IT 0.077 . LmxM.30.2020 242 DTFRITR|EL 0.142 . LmxM.30.2020 247 TRELLSR|IE 0.095 . LmxM.30.2020 252 SRIEDCK|TG 0.068 . LmxM.30.2020 271 MPAYAVK|AA 0.080 . LmxM.30.2020 277 KAAESMK|TV 0.085 . LmxM.30.2020 282 MKTVPFK|EQ 0.074 . LmxM.30.2020 308 AIQNFWK|PS 0.070 . LmxM.30.2020 329 IAGNVIR|TH 0.106 . LmxM.30.2020 335 RTHTTVK|LS 0.061 . LmxM.30.2020 339 TVKLSMR|LP 0.083 . LmxM.30.2020 354 AALQAMK|RI 0.059 . LmxM.30.2020 355 ALQAMKR|IL 0.216 . LmxM.30.2020 366 DPPYGAK|VT 0.069 . LmxM.30.2020 370 GAKVTFK|SV 0.254 . LmxM.30.2020 384 CVAPELK|PW 0.064 . LmxM.30.2020 452 LHIPYAK|GL 0.076 . LmxM.30.2020 460 LTYSIAR|IV 0.123 . LmxM.30.2020 471 HLQNTPK|-- 0.074 . ____________________________^_________________

  • Fasta :-

    >LmxM.30.2020 ATGTCCGCTGGCTGGACCCAGGTGAGGCAGACGGTGGAGTCCGAGTGGGAGAAGACAATC GTGCCGGCCATCTCGGCCTACATCGAGGTGCCGAACCAGAGCCCGCAGTTCGATCCCGAG TGGGCCACCAATGGCCTGCAGGAGAAGGCCTTTGGCATCCTCATCGATTGGATGAGTGCG CAGAACGTGCAGGGGCTCACGTACGACTACCTCACCGCGGATGGCCGCACGCCGTTCCTT CTCGTCGAGATCGCCGGCACAGAGCCGACCAAGAACACGGTGCTCATGTACGGCCACATG GACAAGCAGCCGCCTCTCCGCCCGTGGGCGGAGGGTCTCGACCCCCACAAGGCGGTGGTG CGCGATGGCAAGCTGTACGGCCGCGGTGGCGCCGATGACGGCTACGCGCTCTTTGCCGCC GTCACGGCCATCGCGTCGCTGCAGCGCCACGGCGTCCCGCACGGCCGTGCCGTGATCATG ATCGAGGGCGGCGAGGAGTCGGGCAGCCCGGATCTGGACTACTACATGGAGCGCTGCAAA GAGCGCATCGGCAAGGTGGACCTCATGGTGTGCCTGGACAGCTGCAGCATGAACTACTCG CAGGTGTGGCTCACGACGTCGCTGCGCGGCGTTGCGATGGGTGAGCTGACGGTGCAGACA CTGACGGAGAGCATGCACAGTGGCGTCGCCGGCGGCGTTGTGCCGGACACGTTCCGCATC ACGCGCGAGCTCCTCAGCCGCATCGAGGACTGCAAGACGGGCGAGGTGCTGTTCCCGGAG GCCCACTGCGAGATGCCGGCCTACGCGGTCAAGGCGGCGGAGTCGATGAAGACGGTGCCG TTCAAGGAGCAGTTTGCCATGGCGGCAGGCGTGGCGACGGTGCCTGGCGACAACGTCGAG CTGGCGATTCAGAACTTTTGGAAGCCGAGCCTCACCGTGACGGGCGCCAACCTGCCGGAC CCGCAGATCGCCGGCAACGTCATCCGCACCCACACGACGGTGAAGCTTTCCATGCGCCTG CCACCCCTGGTGGAGGCCGAGGCTGCGCTGCAGGCGATGAAGCGCATCCTGGAGGCAGAC CCGCCGTACGGCGCCAAGGTGACCTTCAAGAGCGTGGGCGCCGGCAACGGCTGCGTTGCA CCGGAGCTGAAGCCGTGGCTGCAGGAGGTGCTACACGAGGGCAGCATCGAGGCCTTCGGC AACACGTACGCGTGCCAGGGCATGGGTGGCGCCATCCCGTTCATCGGCATGCTCATCGAC ACGTATCCGGAGGCGCAGTTCGTTGTGACGGGTCTCCTCGGCCCGCAGAGCAACGCACAC GGGCCGAACGAGTTCCTGCACATCCCGTACGCAAAGGGGTTGACGTACAGCATTGCGCGC ATCGTGGCGGCACACCTCCAGAACACGCCCAAGTGA
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  • Fasta :-

    MSAGWTQVRQTVESEWEKTIVPAISAYIEVPNQSPQFDPEWATNGLQEKAFGILIDWMSA QNVQGLTYDYLTADGRTPFLLVEIAGTEPTKNTVLMYGHMDKQPPLRPWAEGLDPHKAVV RDGKLYGRGGADDGYALFAAVTAIASLQRHGVPHGRAVIMIEGGEESGSPDLDYYMERCK ERIGKVDLMVCLDSCSMNYSQVWLTTSLRGVAMGELTVQTLTESMHSGVAGGVVPDTFRI TRELLSRIEDCKTGEVLFPEAHCEMPAYAVKAAESMKTVPFKEQFAMAAGVATVPGDNVE LAIQNFWKPSLTVTGANLPDPQIAGNVIRTHTTVKLSMRLPPLVEAEAALQAMKRILEAD PPYGAKVTFKSVGAGNGCVAPELKPWLQEVLHEGSIEAFGNTYACQGMGGAIPFIGMLID TYPEAQFVVTGLLGPQSNAHGPNEFLHIPYAKGLTYSIARIVAAHLQNTPK

  • title: metal binding site
  • coordinates: H99,D132,E165,E166,D193,H440
No Results
No Results
IDSitePeptideScoreMethod
LmxM.30.2020246 SRELLSRIED0.993unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India