LmxM.31.0390 | 19S proteasome non-atpase subunit 8

_IDPredictionOTHERSPmTPCS_Position
LmxM.31.0390OTHER0.9999830.0000170.000000
No Results

  • Fasta :-

    >LmxM.31.0390 MSDDSKPTKPDPLGANNDVASDDGSDGKGDVAAPPAFLPTAGRVEVHPLVLLSLVDHYAR MNTSAVQKKRVAGLLLGRYVRDSTGMQTLDINNSFAVPFDEDPQDADVWFFDTNYAQEMF AMHKRVLPKVKVVGWYSSGPTIQPNDMLLHLLVADRFCLNPVYCVVNTDPNNKGVPVRAY TTVQGREGTRSLEFRNIPTHLGAEEAEEIGIEHLLRDLTDSTITTLSTQVQERELSLIHL CKVLQQIEEYLKDVGNAVMPISEDVLEVLQELISLQPEIYARRSSIEMIRHTNDEAIATF LAAIARCIGALHGVIMNRRKLARELQEIKDRRARAAETRLENEKMKIEEAAKEKDNNQA
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/867 Sequence name : 867 Sequence length : 359 VALUES OF COMPUTED PARAMETERS Coef20 : 2.772 CoefTot : 0.112 ChDiff : -13 ZoneTo : 2 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.159 1.835 0.218 0.598 MesoH : -0.815 0.405 -0.429 0.186 MuHd_075 : 11.980 6.515 2.746 1.148 MuHd_095 : 17.983 6.656 2.945 1.358 MuHd_100 : 18.680 7.357 3.691 1.718 MuHd_105 : 12.456 5.215 3.214 1.732 Hmax_075 : -2.800 -3.500 -3.503 0.210 Hmax_095 : -7.400 -6.400 -4.541 -0.530 Hmax_100 : -6.400 -4.900 -4.541 -0.530 Hmax_105 : -1.600 -4.100 -3.365 0.163 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9971 0.0029 DFMC : 0.9945 0.0055
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 359 LmxM.31.0390 MSDDSKPTKPDPLGANNDVASDDGSDGKGDVAAPPAFLPTAGRVEVHPLVLLSLVDHYARMNTSAVQKKRVAGLLLGRYV 80 RDSTGMQTLDINNSFAVPFDEDPQDADVWFFDTNYAQEMFAMHKRVLPKVKVVGWYSSGPTIQPNDMLLHLLVADRFCLN 160 PVYCVVNTDPNNKGVPVRAYTTVQGREGTRSLEFRNIPTHLGAEEAEEIGIEHLLRDLTDSTITTLSTQVQERELSLIHL 240 CKVLQQIEEYLKDVGNAVMPISEDVLEVLQELISLQPEIYARRSSIEMIRHTNDEAIATFLAAIARCIGALHGVIMNRRK 320 LARELQEIKDRRARAAETRLENEKMKIEEAAKEKDNNQA 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ....................................... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmxM.31.0390 6 -MSDDSK|PT 0.066 . LmxM.31.0390 9 DDSKPTK|PD 0.066 . LmxM.31.0390 28 DDGSDGK|GD 0.068 . LmxM.31.0390 43 FLPTAGR|VE 0.064 . LmxM.31.0390 60 LVDHYAR|MN 0.083 . LmxM.31.0390 68 NTSAVQK|KR 0.070 . LmxM.31.0390 69 TSAVQKK|RV 0.192 . LmxM.31.0390 70 SAVQKKR|VA 0.281 . LmxM.31.0390 78 AGLLLGR|YV 0.118 . LmxM.31.0390 81 LLGRYVR|DS 0.347 . LmxM.31.0390 124 EMFAMHK|RV 0.068 . LmxM.31.0390 125 MFAMHKR|VL 0.205 . LmxM.31.0390 129 HKRVLPK|VK 0.068 . LmxM.31.0390 131 RVLPKVK|VV 0.091 . LmxM.31.0390 156 HLLVADR|FC 0.071 . LmxM.31.0390 173 NTDPNNK|GV 0.064 . LmxM.31.0390 178 NKGVPVR|AY 0.138 . LmxM.31.0390 186 YTTVQGR|EG 0.080 . LmxM.31.0390 190 QGREGTR|SL 0.097 . LmxM.31.0390 195 TRSLEFR|NI 0.194 . LmxM.31.0390 216 GIEHLLR|DL 0.137 . LmxM.31.0390 233 STQVQER|EL 0.107 . LmxM.31.0390 242 SLIHLCK|VL 0.078 . LmxM.31.0390 252 QIEEYLK|DV 0.089 . LmxM.31.0390 282 QPEIYAR|RS 0.094 . LmxM.31.0390 283 PEIYARR|SS 0.194 . LmxM.31.0390 290 SSIEMIR|HT 0.099 . LmxM.31.0390 306 FLAAIAR|CI 0.145 . LmxM.31.0390 318 HGVIMNR|RK 0.084 . LmxM.31.0390 319 GVIMNRR|KL 0.121 . LmxM.31.0390 320 VIMNRRK|LA 0.093 . LmxM.31.0390 323 NRRKLAR|EL 0.131 . LmxM.31.0390 329 RELQEIK|DR 0.058 . LmxM.31.0390 331 LQEIKDR|RA 0.120 . LmxM.31.0390 332 QEIKDRR|AR 0.130 . LmxM.31.0390 334 IKDRRAR|AA 0.481 . LmxM.31.0390 339 ARAAETR|LE 0.098 . LmxM.31.0390 344 TRLENEK|MK 0.063 . LmxM.31.0390 346 LENEKMK|IE 0.076 . LmxM.31.0390 352 KIEEAAK|EK 0.064 . LmxM.31.0390 354 EEAAKEK|DN 0.085 . ____________________________^_________________

  • Fasta :-

    >LmxM.31.0390 ATGAGCGACGATTCGAAGCCGACGAAGCCCGACCCACTTGGGGCCAACAACGACGTCGCG TCTGACGACGGCAGCGATGGGAAGGGGGATGTAGCTGCGCCCCCGGCGTTCCTTCCCACC GCGGGCCGCGTGGAAGTGCACCCGCTGGTGCTGCTGTCCCTGGTGGACCACTACGCTCGC ATGAACACCTCTGCCGTGCAGAAAAAGCGCGTGGCGGGGCTGCTGCTCGGGCGCTACGTG CGCGACTCCACAGGGATGCAGACACTCGACATCAACAACAGCTTCGCCGTTCCCTTTGAC GAGGACCCGCAGGACGCTGACGTGTGGTTCTTTGACACCAACTACGCTCAGGAGATGTTT GCGATGCACAAACGCGTGTTACCGAAGGTGAAAGTGGTGGGGTGGTACTCCTCCGGCCCC ACCATCCAGCCCAACGACATGCTGCTGCATCTTCTGGTCGCGGATCGATTTTGTCTCAAT CCTGTCTACTGTGTAGTGAACACCGACCCAAACAACAAGGGCGTGCCGGTGCGGGCCTAC ACGACGGTGCAGGGGCGTGAGGGCACGCGCTCACTCGAGTTCCGCAACATCCCGACCCAC CTTGGTGCGGAGGAAGCCGAGGAGATCGGCATTGAGCATCTCCTGCGCGATCTGACCGAC TCCACCATCACCACGCTCTCCACGCAGGTGCAGGAGCGGGAGCTGTCCCTGATTCATCTG TGCAAGGTGCTTCAGCAGATAGAGGAATACCTCAAGGATGTCGGAAACGCCGTCATGCCG ATCTCCGAGGATGTACTGGAGGTACTGCAGGAGCTGATTAGCCTGCAGCCTGAGATCTAC GCCCGCCGCTCGTCGATCGAAATGATTCGGCACACCAACGACGAGGCGATTGCGACCTTC TTAGCGGCCATCGCGCGCTGCATCGGTGCGCTGCACGGCGTCATAATGAACCGCCGCAAG CTAGCGCGAGAGCTGCAGGAGATCAAAGATCGTCGCGCCCGCGCTGCCGAGACACGGTTG GAGAACGAAAAGATGAAGATCGAGGAGGCAGCCAAGGAAAAAGACAACAACCAGGCATAG
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  • Fasta :-

    MSDDSKPTKPDPLGANNDVASDDGSDGKGDVAAPPAFLPTAGRVEVHPLVLLSLVDHYAR MNTSAVQKKRVAGLLLGRYVRDSTGMQTLDINNSFAVPFDEDPQDADVWFFDTNYAQEMF AMHKRVLPKVKVVGWYSSGPTIQPNDMLLHLLVADRFCLNPVYCVVNTDPNNKGVPVRAY TTVQGREGTRSLEFRNIPTHLGAEEAEEIGIEHLLRDLTDSTITTLSTQVQERELSLIHL CKVLQQIEEYLKDVGNAVMPISEDVLEVLQELISLQPEIYARRSSIEMIRHTNDEAIATF LAAIARCIGALHGVIMNRRKLARELQEIKDRRARAAETRLENEKMKIEEAAKEKDNNQA

    No Results
    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmxM.31.0390285 SARRSSIEMI0.997unspLmxM.31.0390285 SARRSSIEMI0.997unspLmxM.31.0390285 SARRSSIEMI0.997unspLmxM.31.039083 SYVRDSTGMQ0.997unspLmxM.31.0390284 SYARRSSIEM0.996unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India