LmxM.31.3680 | enoyl-CoA hydratase/isomerase family protein, putative

_IDPredictionOTHERSPmTPCS_Position
LmxM.31.3680OTHER0.9033980.0018320.094770
No Results

  • Fasta :-

    >LmxM.31.3680 MHRTGARCSASVLCKDYPHARHITLNRPNSLNALDYGMTRELHRLYVTEPAPPSSLYILT GAGTKAFCAGGDVIGLATNNPSGCGREFFYWEYQVDYKTSIIPAGQVCLWDGYVLGGGAG LSIGSAYRVASEKACFAMPEVAIGMFPDVGASWFLPRLSVPGLGLYMCLTGHRLHGADLV HLGLATHFVPSAKMSELEQALVSMSDAGDVEAVLDKYTTPTTQLPPCTIAHSFSSLARYF DITANLTISSILDACRAHAQTDPLTKAAADLMPSFSPTAMTLALELMKRGSKLSTPVEAF QMEYCVSQHMIATHDFREGVRALLIDKDKKPKWQPSTVAKVTAEAIDAYFRPTTPNQPVW DPVVPLSERAS
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/808 Sequence name : 808 Sequence length : 371 VALUES OF COMPUTED PARAMETERS Coef20 : 3.970 CoefTot : -0.455 ChDiff : -3 ZoneTo : 34 KR : 5 DE : 1 CleavSite : 31 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.371 1.182 0.204 0.600 MesoH : 0.423 0.750 -0.045 0.397 MuHd_075 : 36.328 16.020 9.169 6.878 MuHd_095 : 31.253 17.179 8.442 8.047 MuHd_100 : 21.323 16.913 7.766 6.640 MuHd_105 : 18.167 15.206 8.245 6.534 Hmax_075 : 7.438 8.900 2.447 3.870 Hmax_095 : 8.900 7.400 2.618 3.520 Hmax_100 : 3.100 11.800 -0.617 3.760 Hmax_105 : 0.087 7.525 -0.641 2.940 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.2063 0.7937 DFMC : 0.1866 0.8134 This protein is probably imported in mitochondria. f(Ser) = 0.0882 f(Arg) = 0.1176 CMi = 0.37594 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 371 LmxM.31.3680 MHRTGARCSASVLCKDYPHARHITLNRPNSLNALDYGMTRELHRLYVTEPAPPSSLYILTGAGTKAFCAGGDVIGLATNN 80 PSGCGREFFYWEYQVDYKTSIIPAGQVCLWDGYVLGGGAGLSIGSAYRVASEKACFAMPEVAIGMFPDVGASWFLPRLSV 160 PGLGLYMCLTGHRLHGADLVHLGLATHFVPSAKMSELEQALVSMSDAGDVEAVLDKYTTPTTQLPPCTIAHSFSSLARYF 240 DITANLTISSILDACRAHAQTDPLTKAAADLMPSFSPTAMTLALELMKRGSKLSTPVEAFQMEYCVSQHMIATHDFREGV 320 RALLIDKDKKPKWQPSTVAKVTAEAIDAYFRPTTPNQPVWDPVVPLSERAS 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmxM.31.3680 3 ----MHR|TG 0.074 . LmxM.31.3680 7 MHRTGAR|CS 0.094 . LmxM.31.3680 15 SASVLCK|DY 0.098 . LmxM.31.3680 21 KDYPHAR|HI 0.119 . LmxM.31.3680 27 RHITLNR|PN 0.084 . LmxM.31.3680 40 LDYGMTR|EL 0.088 . LmxM.31.3680 44 MTRELHR|LY 0.079 . LmxM.31.3680 65 LTGAGTK|AF 0.068 . LmxM.31.3680 86 NPSGCGR|EF 0.128 . LmxM.31.3680 98 EYQVDYK|TS 0.059 . LmxM.31.3680 128 SIGSAYR|VA 0.096 . LmxM.31.3680 133 YRVASEK|AC 0.073 . LmxM.31.3680 157 ASWFLPR|LS 0.102 . LmxM.31.3680 173 MCLTGHR|LH 0.081 . LmxM.31.3680 193 HFVPSAK|MS 0.072 . LmxM.31.3680 216 VEAVLDK|YT 0.067 . LmxM.31.3680 238 SFSSLAR|YF 0.123 . LmxM.31.3680 256 SILDACR|AH 0.076 . LmxM.31.3680 266 QTDPLTK|AA 0.075 . LmxM.31.3680 288 LALELMK|RG 0.056 . LmxM.31.3680 289 ALELMKR|GS 0.151 . LmxM.31.3680 292 LMKRGSK|LS 0.111 . LmxM.31.3680 317 IATHDFR|EG 0.076 . LmxM.31.3680 321 DFREGVR|AL 0.070 . LmxM.31.3680 327 RALLIDK|DK 0.059 . LmxM.31.3680 329 LLIDKDK|KP 0.065 . LmxM.31.3680 330 LIDKDKK|PK 0.080 . LmxM.31.3680 332 DKDKKPK|WQ 0.061 . LmxM.31.3680 340 QPSTVAK|VT 0.101 . LmxM.31.3680 351 AIDAYFR|PT 0.089 . LmxM.31.3680 369 VVPLSER|AS 0.077 . ____________________________^_________________

  • Fasta :-

    >LmxM.31.3680 ATGCATCGCACCGGCGCGCGTTGTAGCGCGAGCGTGCTCTGTAAAGACTACCCACATGCG CGCCACATTACCCTCAACCGACCCAATTCACTGAACGCGCTGGATTATGGCATGACACGA GAGCTGCACCGACTGTACGTGACAGAGCCGGCTCCTCCGTCATCCCTGTACATCCTCACC GGGGCGGGCACAAAGGCATTCTGCGCCGGCGGCGATGTGATCGGCCTCGCGACGAACAAC CCGTCCGGATGCGGTCGTGAATTCTTCTACTGGGAGTACCAAGTAGACTACAAGACGAGC ATCATTCCTGCTGGGCAGGTGTGCTTGTGGGACGGCTACGTGCTCGGTGGCGGTGCTGGC TTATCGATTGGAAGTGCTTATCGCGTGGCGTCGGAGAAGGCGTGCTTTGCAATGCCTGAG GTGGCCATAGGTATGTTCCCCGATGTAGGGGCTTCGTGGTTCCTGCCGCGGCTGTCAGTG CCTGGACTTGGGCTCTACATGTGTCTCACCGGCCACCGGCTCCACGGGGCCGACCTTGTG CACCTTGGGCTTGCAACGCACTTTGTGCCATCTGCCAAGATGAGCGAGCTGGAGCAGGCT CTCGTCTCGATGTCGGACGCAGGTGATGTAGAGGCGGTGCTAGACAAGTACACGACGCCG ACAACGCAGCTGCCACCATGCACCATCGCCCATTCCTTTTCCTCTCTCGCCAGGTATTTT GACATAACGGCCAACCTAACCATATCGTCCATCTTGGACGCGTGCAGGGCGCATGCACAG ACGGATCCGCTGACCAAGGCAGCCGCGGACCTCATGCCCTCCTTTTCCCCAACGGCCATG ACGCTCGCACTGGAGCTTATGAAGCGCGGTTCGAAGCTGAGCACACCCGTGGAGGCGTTC CAGATGGAGTACTGCGTTTCCCAGCACATGATCGCGACACACGACTTTCGCGAAGGTGTC CGAGCCCTGCTCATCGATAAAGACAAGAAGCCGAAGTGGCAACCGTCAACCGTTGCCAAG GTAACAGCGGAGGCCATCGATGCGTATTTCCGCCCCACCACACCGAACCAGCCGGTCTGG GATCCAGTGGTGCCGCTCTCGGAGCGCGCATCGTGA
  • Download Fasta

  • Fasta :-

    MHRTGARCSASVLCKDYPHARHITLNRPNSLNALDYGMTRELHRLYVTEPAPPSSLYILT GAGTKAFCAGGDVIGLATNNPSGCGREFFYWEYQVDYKTSIIPAGQVCLWDGYVLGGGAG LSIGSAYRVASEKACFAMPEVAIGMFPDVGASWFLPRLSVPGLGLYMCLTGHRLHGADLV HLGLATHFVPSAKMSELEQALVSMSDAGDVEAVLDKYTTPTTQLPPCTIAHSFSSLARYF DITANLTISSILDACRAHAQTDPLTKAAADLMPSFSPTAMTLALELMKRGSKLSTPVEAF QMEYCVSQHMIATHDFREGVRALLIDKDKKPKWQPSTVAKVTAEAIDAYFRPTTPNQPVW DPVVPLSERAS

  • title: substrate binding site
  • coordinates: L31,A33,K65,A69,G70,G71,D72,V73,Y113,L115,G116,G117,P139,E140,I143
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmxM.31.3680203 SQALVSMSDA0.991unspLmxM.31.3680203 SQALVSMSDA0.991unspLmxM.31.3680203 SQALVSMSDA0.991unspLmxM.31.3680131 SYRVASEKAC0.991unspLmxM.31.3680191 SHFVPSAKMS0.992unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India