LmxM.32.0400 | serine peptidase, putative

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_IDPredictionOTHERSPmTPCS_Position
LmxM.32.0400OTHER0.5744600.0000510.425488
No Results

  • Fasta :-

    >LmxM.32.0400 MLQSFVNRIVFVPPRNPSSLQRVQLLQRKRHMHFTSKSSGERIAYFHFDSKGDLVTKDNL EQVVNSSMVLLFHHGNAEDLGGAFSYAQSMACVFRVAVVVYDYCGYGFSGFPDAATPAEV TEKSVYSDADHMYAHLLSLGYLAHRIIIVGRSVGGGPACYLAEKHHEKVGGLVLISTFTS CLRVVSSCCLPYLCWCVDLFPNYRRIEHIMECPVLVMHGTRDNVVPHHCSSELLDDIVAR RTNALKRLLKRREATRAKQANRSCTLGGASTGPTNTTTASAAISVADELLVTAHPPLDGE PVSVFDLYRRAYDGLPEAVRQMAEEHLDVTAANVSIGAFHKWFAGCGHNDIEAREGHTFS EMFEYFVHFATAFSVEREALLSGKPLTDAAKASGDSFNRADSETRE
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/431 Sequence name : 431 Sequence length : 406 VALUES OF COMPUTED PARAMETERS Coef20 : 4.277 CoefTot : -0.766 ChDiff : -5 ZoneTo : 40 KR : 7 DE : 0 CleavSite : 17 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.229 1.747 0.492 0.528 MesoH : 0.056 0.742 -0.091 0.306 MuHd_075 : 25.841 19.693 7.290 6.327 MuHd_095 : 31.526 19.731 7.864 8.475 MuHd_100 : 37.065 21.929 8.583 9.615 MuHd_105 : 37.270 23.242 8.398 9.907 Hmax_075 : 12.133 9.683 1.668 4.037 Hmax_095 : 15.575 16.300 2.561 6.140 Hmax_100 : 9.800 15.800 1.318 5.240 Hmax_105 : 8.138 13.125 1.049 4.340 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.1487 0.8513 DFMC : 0.3259 0.6741 This protein is probably imported in mitochondria. f(Ser) = 0.1500 f(Arg) = 0.1250 CMi = 0.61224 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 406 LmxM.32.0400 MLQSFVNRIVFVPPRNPSSLQRVQLLQRKRHMHFTSKSSGERIAYFHFDSKGDLVTKDNLEQVVNSSMVLLFHHGNAEDL 80 GGAFSYAQSMACVFRVAVVVYDYCGYGFSGFPDAATPAEVTEKSVYSDADHMYAHLLSLGYLAHRIIIVGRSVGGGPACY 160 LAEKHHEKVGGLVLISTFTSCLRVVSSCCLPYLCWCVDLFPNYRRIEHIMECPVLVMHGTRDNVVPHHCSSELLDDIVAR 240 RTNALKRLLKRREATRAKQANRSCTLGGASTGPTNTTTASAAISVADELLVTAHPPLDGEPVSVFDLYRRAYDGLPEAVR 320 QMAEEHLDVTAANVSIGAFHKWFAGCGHNDIEAREGHTFSEMFEYFVHFATAFSVEREALLSGKPLTDAAKASGDSFNRA 400 DSETRE 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ...... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmxM.32.0400 8 LQSFVNR|IV 0.148 . LmxM.32.0400 15 IVFVPPR|NP 0.088 . LmxM.32.0400 22 NPSSLQR|VQ 0.087 . LmxM.32.0400 28 RVQLLQR|KR 0.077 . LmxM.32.0400 29 VQLLQRK|RH 0.062 . LmxM.32.0400 30 QLLQRKR|HM 0.128 . LmxM.32.0400 37 HMHFTSK|SS 0.097 . LmxM.32.0400 42 SKSSGER|IA 0.114 . LmxM.32.0400 51 YFHFDSK|GD 0.058 . LmxM.32.0400 57 KGDLVTK|DN 0.067 . LmxM.32.0400 95 SMACVFR|VA 0.120 . LmxM.32.0400 123 PAEVTEK|SV 0.099 . LmxM.32.0400 145 LGYLAHR|II 0.089 . LmxM.32.0400 151 RIIIVGR|SV 0.404 . LmxM.32.0400 164 ACYLAEK|HH 0.068 . LmxM.32.0400 168 AEKHHEK|VG 0.071 . LmxM.32.0400 183 TFTSCLR|VV 0.081 . LmxM.32.0400 204 DLFPNYR|RI 0.090 . LmxM.32.0400 205 LFPNYRR|IE 0.115 . LmxM.32.0400 221 LVMHGTR|DN 0.092 . LmxM.32.0400 240 LDDIVAR|RT 0.096 . LmxM.32.0400 241 DDIVARR|TN 0.096 . LmxM.32.0400 246 RRTNALK|RL 0.060 . LmxM.32.0400 247 RTNALKR|LL 0.216 . LmxM.32.0400 250 ALKRLLK|RR 0.096 . LmxM.32.0400 251 LKRLLKR|RE 0.132 . LmxM.32.0400 252 KRLLKRR|EA 0.222 . LmxM.32.0400 256 KRREATR|AK 0.114 . LmxM.32.0400 258 REATRAK|QA 0.076 . LmxM.32.0400 262 RAKQANR|SC 0.149 . LmxM.32.0400 309 SVFDLYR|RA 0.127 . LmxM.32.0400 310 VFDLYRR|AY 0.112 . LmxM.32.0400 320 GLPEAVR|QM 0.075 . LmxM.32.0400 341 SIGAFHK|WF 0.074 . LmxM.32.0400 354 HNDIEAR|EG 0.094 . LmxM.32.0400 377 TAFSVER|EA 0.085 . LmxM.32.0400 384 EALLSGK|PL 0.068 . LmxM.32.0400 391 PLTDAAK|AS 0.075 . LmxM.32.0400 399 SGDSFNR|AD 0.090 . LmxM.32.0400 405 RADSETR|E- 0.080 . ____________________________^_________________

  • Fasta :-

    >LmxM.32.0400 ATGTTACAGTCGTTCGTGAACCGCATCGTTTTTGTTCCCCCACGGAACCCGAGCAGCCTG CAGCGGGTGCAGCTGCTGCAACGCAAGCGACACATGCACTTTACGAGCAAGAGCAGCGGC GAGAGAATTGCGTACTTCCACTTCGACTCTAAAGGCGATCTCGTGACGAAGGACAACCTC GAACAGGTCGTGAATTCCTCCATGGTCTTGCTCTTCCACCACGGCAACGCCGAGGACCTC GGCGGCGCCTTCAGCTACGCGCAGTCTATGGCCTGCGTCTTTAGAGTAGCGGTGGTGGTG TACGACTACTGCGGCTACGGTTTTTCCGGCTTTCCTGACGCTGCGACGCCGGCGGAGGTG ACGGAGAAGAGCGTCTACAGCGACGCCGATCACATGTACGCCCACCTCCTCTCTCTCGGC TACCTCGCTCACCGCATTATTATTGTTGGCCGCTCCGTCGGAGGTGGTCCGGCCTGCTAC CTCGCTGAGAAGCATCACGAGAAGGTGGGGGGCCTAGTGCTTATATCGACCTTTACCTCC TGCCTCCGCGTCGTCTCGTCTTGTTGTCTTCCGTACTTGTGCTGGTGCGTTGACTTGTTT CCTAACTACCGCCGCATCGAGCACATCATGGAGTGCCCAGTGTTGGTGATGCACGGGACC CGCGACAACGTCGTCCCGCACCATTGCTCGAGCGAGTTGCTCGATGACATCGTAGCACGC CGCACCAACGCGTTGAAACGACTCTTGAAGAGGCGTGAGGCGACGCGGGCAAAGCAGGCA AACCGCTCATGTACGCTCGGAGGTGCCTCAACAGGGCCAACAAACACTACGACGGCATCC GCGGCTATCAGCGTTGCTGACGAGCTGCTCGTCACCGCCCACCCACCCCTTGATGGAGAG CCAGTCAGTGTGTTCGATCTCTATCGCCGCGCCTATGATGGCCTGCCCGAGGCGGTGCGG CAGATGGCGGAGGAGCATCTCGACGTGACCGCTGCCAACGTCAGCATTGGGGCCTTTCAC AAGTGGTTTGCGGGTTGCGGGCACAACGACATCGAGGCACGCGAGGGGCACACCTTCTCG GAAATGTTTGAGTATTTCGTGCACTTTGCGACCGCCTTCTCGGTGGAGCGGGAGGCGCTG CTGTCGGGCAAGCCGCTCACCGATGCAGCGAAGGCATCTGGTGACTCTTTTAACAGGGCT GACAGTGAGACCCGCGAGTAG
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  • Fasta :-

    MLQSFVNRIVFVPPRNPSSLQRVQLLQRKRHMHFTSKSSGERIAYFHFDSKGDLVTKDNL EQVVNSSMVLLFHHGNAEDLGGAFSYAQSMACVFRVAVVVYDYCGYGFSGFPDAATPAEV TEKSVYSDADHMYAHLLSLGYLAHRIIIVGRSVGGGPACYLAEKHHEKVGGLVLISTFTS CLRVVSSCCLPYLCWCVDLFPNYRRIEHIMECPVLVMHGTRDNVVPHHCSSELLDDIVAR RTNALKRLLKRREATRAKQANRSCTLGGASTGPTNTTTASAAISVADELLVTAHPPLDGE PVSVFDLYRRAYDGLPEAVRQMAEEHLDVTAANVSIGAFHKWFAGCGHNDIEAREGHTFS EMFEYFVHFATAFSVEREALLSGKPLTDAAKASGDSFNRADSETRE

    No Results
    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmxM.32.040039 STSKSSGERI0.995unspLmxM.32.0400402 SNRADSETRE0.996unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India