LmxM.32.1800 | Der1-like family, putative

  • Computed_GO_Component_IDs:        

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  • Computed_GO_Functions:        

  • Computed_GO_Process_IDs:        

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  • Curated_GO_Component_IDs:  GO:0005737      

  • Curated_GO_Components:  cytoplasm      

  • Curated_GO_Function_IDs:        

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_IDPredictionOTHERSPmTPCS_Position
LmxM.32.1800OTHER0.9989900.0008510.000159
No Results

  • Fasta :-

    >LmxM.32.1800 MNNVIENALRETPITLVVCGLMGMLGVMSSLEVIHPLYLLLSPSLVFKEHQYWRLVTNFL YFGPISAHCIMEIQWIYLVSSYLEAQYYHRRPLDYIFLLLIIGCSLLGLRFSSIVNVPYL SYMLGTCLTYIMSRLFNDMEVAIFFVVPVPMRLLPFVLLIMNTMVSGMTNEVLGNVLGHI LWYFLEVFPRITGQSPLRIQRLLERAFAAPVRQAT
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/178 Sequence name : 178 Sequence length : 215 VALUES OF COMPUTED PARAMETERS Coef20 : 3.972 CoefTot : -0.268 ChDiff : 1 ZoneTo : 5 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.171 2.294 0.434 0.796 MesoH : 0.918 1.435 0.080 0.509 MuHd_075 : 26.785 21.821 9.107 5.725 MuHd_095 : 36.693 19.896 9.426 6.486 MuHd_100 : 32.497 15.427 7.901 5.387 MuHd_105 : 27.686 15.991 6.761 5.216 Hmax_075 : 16.333 22.867 4.149 7.257 Hmax_095 : 17.500 19.300 3.258 5.910 Hmax_100 : 16.100 14.800 2.552 4.760 Hmax_105 : 8.500 12.000 0.330 3.820 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.5928 0.4072 DFMC : 0.6617 0.3383
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 215 LmxM.32.1800 MNNVIENALRETPITLVVCGLMGMLGVMSSLEVIHPLYLLLSPSLVFKEHQYWRLVTNFLYFGPISAHCIMEIQWIYLVS 80 SYLEAQYYHRRPLDYIFLLLIIGCSLLGLRFSSIVNVPYLSYMLGTCLTYIMSRLFNDMEVAIFFVVPVPMRLLPFVLLI 160 MNTMVSGMTNEVLGNVLGHILWYFLEVFPRITGQSPLRIQRLLERAFAAPVRQAT 240 ................................................................................ 80 ................................................................................ 160 ....................................................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmxM.32.1800 10 VIENALR|ET 0.075 . LmxM.32.1800 48 SPSLVFK|EH 0.072 . LmxM.32.1800 54 KEHQYWR|LV 0.121 . LmxM.32.1800 90 EAQYYHR|RP 0.074 . LmxM.32.1800 91 AQYYHRR|PL 0.155 . LmxM.32.1800 110 CSLLGLR|FS 0.076 . LmxM.32.1800 134 LTYIMSR|LF 0.092 . LmxM.32.1800 152 VVPVPMR|LL 0.076 . LmxM.32.1800 190 FLEVFPR|IT 0.133 . LmxM.32.1800 198 TGQSPLR|IQ 0.086 . LmxM.32.1800 201 SPLRIQR|LL 0.270 . LmxM.32.1800 205 IQRLLER|AF 0.087 . LmxM.32.1800 212 AFAAPVR|QA 0.111 . ____________________________^_________________

  • Fasta :-

    >LmxM.32.1800 ATGAACAACGTTATTGAGAATGCCCTGCGGGAGACACCCATCACACTCGTGGTCTGCGGG CTGATGGGGATGTTAGGCGTTATGTCGTCATTGGAGGTGATTCATCCTCTCTACTTGCTG CTCAGTCCGTCTTTGGTGTTCAAAGAGCATCAGTACTGGCGTCTGGTCACCAACTTCCTC TACTTTGGTCCAATCAGCGCTCACTGCATCATGGAAATTCAGTGGATCTACCTGGTGAGC TCTTACCTTGAAGCGCAGTACTACCACAGGCGACCGCTTGACTATATCTTCCTACTCTTG ATCATCGGCTGCTCGCTTCTGGGCCTACGGTTTTCGTCGATTGTGAATGTGCCATACCTA AGCTACATGCTAGGCACATGCCTGACATACATTATGAGTCGTCTCTTCAACGACATGGAA GTTGCCATCTTTTTCGTGGTTCCGGTTCCAATGCGCCTTCTCCCGTTTGTGCTTCTGATC ATGAACACAATGGTGTCTGGAATGACGAACGAGGTCCTGGGCAATGTTCTCGGGCACATC TTATGGTATTTTTTAGAGGTGTTTCCTCGCATCACCGGGCAGAGCCCTCTTCGAATCCAG CGTCTGCTCGAGCGGGCATTTGCTGCACCGGTACGCCAGGCGACATAG
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  • Fasta :-

    MNNVIENALRETPITLVVCGLMGMLGVMSSLEVIHPLYLLLSPSLVFKEHQYWRLVTNFL YFGPISAHCIMEIQWIYLVSSYLEAQYYHRRPLDYIFLLLIIGCSLLGLRFSSIVNVPYL SYMLGTCLTYIMSRLFNDMEVAIFFVVPVPMRLLPFVLLIMNTMVSGMTNEVLGNVLGHI LWYFLEVFPRITGQSPLRIQRLLERAFAAPVRQAT

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Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India