LmxM.32.2610 | Mitochondrial-processing peptidase subunit alpha

_IDPredictionOTHERSPmTPCS_Position
LmxM.32.2610mTP0.4968100.0004630.502727CS pos: 10-11. VRG-VA. Pr: 0.1300
No Results

  • Fasta :-

    >LmxM.32.2610 MLAASRLVRGVAETVTRENFTISRLTNGLRVITCEDGNGITGMGLFSLNGPKFEEEGSFG AAAVMESLPLRSNTRMTTETISQSLGVFGNAYKVTNNREAMSVMLMMPRYHQKEGLEVLN GMWLHPTENEEEFAVAKAQTLHRSSLMSRDATSMLFELVHKAGWSGRGLGNPLSPTEQQL EQLTLERFHAFHRRYTTPERTVLAATGVTDHQAFVQEAEVRLQFPQVTAPSVLSSSAETA NKAAAATAQLHPYTGGVEYVQNTTAPESMNKFQEKNLSHMALFFQAIPMAHPDYFTYSVI QTLLGGGTSFSSGGPGKGMQTKLFREVLNREPNLHGMECITAWYSDGGLIGLYGSAPHEH VNNLLKIMVFQSASISQRITPMHLEMAKNQLSSQLILLGEGREQLLNDMGFNLLVHNYTI TPQETIQGSAQVTMTRLQEVCAQLIKHPVTFAVYGETKGMPEYHQLGQALKKSYASLNKS TAV
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/730 Sequence name : 730 Sequence length : 483 VALUES OF COMPUTED PARAMETERS Coef20 : 4.725 CoefTot : 0.799 ChDiff : -4 ZoneTo : 12 KR : 2 DE : 0 CleavSite : 11 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.312 0.806 0.101 0.481 MesoH : -0.168 0.164 -0.341 0.228 MuHd_075 : 21.804 13.974 5.493 3.317 MuHd_095 : 45.862 27.563 11.264 10.310 MuHd_100 : 42.082 25.368 9.637 9.633 MuHd_105 : 33.393 21.590 7.301 7.962 Hmax_075 : 0.300 10.200 -0.331 1.990 Hmax_095 : 15.600 21.800 3.587 6.260 Hmax_100 : 15.000 17.300 2.714 5.000 Hmax_105 : 7.525 13.913 0.581 4.261 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0471 0.9529 DFMC : 0.0730 0.9270 This protein is probably imported in mitochondria. f(Ser) = 0.0833 f(Arg) = 0.1667 CMi = 0.27473 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 483 LmxM.32.2610 MLAASRLVRGVAETVTRENFTISRLTNGLRVITCEDGNGITGMGLFSLNGPKFEEEGSFGAAAVMESLPLRSNTRMTTET 80 ISQSLGVFGNAYKVTNNREAMSVMLMMPRYHQKEGLEVLNGMWLHPTENEEEFAVAKAQTLHRSSLMSRDATSMLFELVH 160 KAGWSGRGLGNPLSPTEQQLEQLTLERFHAFHRRYTTPERTVLAATGVTDHQAFVQEAEVRLQFPQVTAPSVLSSSAETA 240 NKAAAATAQLHPYTGGVEYVQNTTAPESMNKFQEKNLSHMALFFQAIPMAHPDYFTYSVIQTLLGGGTSFSSGGPGKGMQ 320 TKLFREVLNREPNLHGMECITAWYSDGGLIGLYGSAPHEHVNNLLKIMVFQSASISQRITPMHLEMAKNQLSSQLILLGE 400 GREQLLNDMGFNLLVHNYTITPQETIQGSAQVTMTRLQEVCAQLIKHPVTFAVYGETKGMPEYHQLGQALKKSYASLNKS 480 TAV 560 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ... 560 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmxM.32.2610 6 -MLAASR|LV 0.096 . LmxM.32.2610 9 AASRLVR|GV 0.440 . LmxM.32.2610 17 VAETVTR|EN 0.084 . LmxM.32.2610 24 ENFTISR|LT 0.077 . LmxM.32.2610 30 RLTNGLR|VI 0.075 . LmxM.32.2610 52 FSLNGPK|FE 0.065 . LmxM.32.2610 71 MESLPLR|SN 0.146 . LmxM.32.2610 75 PLRSNTR|MT 0.102 . LmxM.32.2610 93 VFGNAYK|VT 0.062 . LmxM.32.2610 98 YKVTNNR|EA 0.106 . LmxM.32.2610 109 VMLMMPR|YH 0.086 . LmxM.32.2610 113 MPRYHQK|EG 0.086 . LmxM.32.2610 137 EEFAVAK|AQ 0.064 . LmxM.32.2610 143 KAQTLHR|SS 0.133 . LmxM.32.2610 149 RSSLMSR|DA 0.186 . LmxM.32.2610 161 LFELVHK|AG 0.062 . LmxM.32.2610 167 KAGWSGR|GL 0.143 . LmxM.32.2610 187 EQLTLER|FH 0.071 . LmxM.32.2610 193 RFHAFHR|RY 0.100 . LmxM.32.2610 194 FHAFHRR|YT 0.272 . LmxM.32.2610 200 RYTTPER|TV 0.098 . LmxM.32.2610 221 VQEAEVR|LQ 0.089 . LmxM.32.2610 242 SAETANK|AA 0.065 . LmxM.32.2610 271 APESMNK|FQ 0.081 . LmxM.32.2610 275 MNKFQEK|NL 0.085 . LmxM.32.2610 317 SSGGPGK|GM 0.081 . LmxM.32.2610 322 GKGMQTK|LF 0.080 . LmxM.32.2610 325 MQTKLFR|EV 0.118 . LmxM.32.2610 330 FREVLNR|EP 0.082 . LmxM.32.2610 366 HVNNLLK|IM 0.057 . LmxM.32.2610 378 SASISQR|IT 0.131 . LmxM.32.2610 388 MHLEMAK|NQ 0.058 . LmxM.32.2610 402 ILLGEGR|EQ 0.068 . LmxM.32.2610 436 AQVTMTR|LQ 0.075 . LmxM.32.2610 446 VCAQLIK|HP 0.055 . LmxM.32.2610 458 AVYGETK|GM 0.059 . LmxM.32.2610 471 QLGQALK|KS 0.068 . LmxM.32.2610 472 LGQALKK|SY 0.134 . LmxM.32.2610 479 SYASLNK|ST 0.082 . ____________________________^_________________

  • Fasta :-

    >LmxM.32.2610 ATGCTTGCCGCGAGTCGCCTTGTCCGCGGCGTTGCGGAGACAGTCACGCGCGAGAACTTC ACCATATCCCGTCTTACGAACGGCCTGCGCGTCATCACATGCGAAGACGGCAACGGCATC ACTGGCATGGGGCTCTTCTCCTTGAACGGGCCCAAGTTTGAGGAGGAGGGAAGCTTTGGC GCTGCGGCGGTGATGGAGTCGCTCCCGCTGCGCAGCAACACACGCATGACGACCGAGACG ATTAGCCAGTCACTCGGTGTCTTTGGCAACGCATACAAGGTGACTAACAACCGCGAGGCC ATGTCCGTCATGCTCATGATGCCGCGCTACCACCAGAAGGAAGGGCTTGAGGTACTGAAC GGAATGTGGCTGCACCCAACCGAGAACGAGGAGGAGTTCGCCGTGGCGAAGGCACAGACC CTGCATCGCAGTTCTCTCATGAGCCGAGACGCGACAAGCATGCTGTTCGAGCTTGTCCAC AAGGCCGGCTGGAGCGGTCGTGGGCTCGGCAACCCGCTCTCCCCGACGGAGCAGCAGCTG GAGCAGCTGACACTGGAGAGGTTCCACGCCTTCCACCGCCGCTACACCACGCCGGAGCGG ACGGTGCTGGCGGCGACGGGTGTGACAGATCACCAGGCGTTTGTGCAGGAAGCGGAGGTG CGGCTGCAGTTCCCTCAAGTGACGGCGCCATCCGTCCTTTCGTCTAGCGCAGAGACGGCG AACAAGGCAGCTGCTGCGACAGCTCAGCTTCACCCGTACACGGGCGGCGTCGAGTACGTG CAGAACACAACGGCGCCGGAGTCCATGAACAAGTTTCAGGAGAAGAACCTCAGCCACATG GCGCTCTTCTTCCAAGCTATCCCAATGGCCCACCCGGACTACTTCACCTACTCGGTCATT CAGACGCTCCTGGGGGGTGGCACGTCGTTCAGCTCTGGCGGGCCTGGCAAGGGCATGCAA ACGAAGCTGTTTCGTGAGGTACTGAACCGGGAGCCGAACCTACACGGCATGGAGTGCATT ACGGCGTGGTACAGCGATGGTGGTTTGATCGGCCTCTACGGCTCTGCGCCACACGAGCAC GTGAACAACCTTTTGAAGATCATGGTTTTCCAGTCGGCGTCGATTAGCCAGCGCATCACC CCGATGCACCTGGAGATGGCCAAAAACCAGCTAAGCTCGCAGCTCATCCTGTTGGGCGAG GGGCGTGAGCAGCTGCTGAATGACATGGGCTTCAATCTTCTCGTGCACAACTACACGATT ACGCCGCAGGAGACTATCCAGGGCAGCGCGCAGGTGACAATGACACGTCTCCAGGAGGTG TGTGCGCAGCTGATCAAGCACCCGGTGACGTTTGCCGTCTATGGGGAGACGAAGGGGATG CCGGAGTACCATCAGCTAGGCCAAGCTCTGAAGAAGTCGTATGCGTCCCTGAACAAGAGC ACAGCGGTGTGA
  • Download Fasta

  • Fasta :-

    MLAASRLVRGVAETVTRENFTISRLTNGLRVITCEDGNGITGMGLFSLNGPKFEEEGSFG AAAVMESLPLRSNTRMTTETISQSLGVFGNAYKVTNNREAMSVMLMMPRYHQKEGLEVLN GMWLHPTENEEEFAVAKAQTLHRSSLMSRDATSMLFELVHKAGWSGRGLGNPLSPTEQQL EQLTLERFHAFHRRYTTPERTVLAATGVTDHQAFVQEAEVRLQFPQVTAPSVLSSSAETA NKAAAATAQLHPYTGGVEYVQNTTAPESMNKFQEKNLSHMALFFQAIPMAHPDYFTYSVI QTLLGGGTSFSSGGPGKGMQTKLFREVLNREPNLHGMECITAWYSDGGLIGLYGSAPHEH VNNLLKIMVFQSASISQRITPMHLEMAKNQLSSQLILLGEGREQLLNDMGFNLLVHNYTI TPQETIQGSAQVTMTRLQEVCAQLIKHPVTFAVYGETKGMPEYHQLGQALKKSYASLNKS TAV

    No Results
No Results
No Results
IDSitePeptideScoreMethod
LmxM.32.2610197 TRRYTTPERT0.994unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India