LmxM.33.4340 | 20s proteasome beta 7 subunit, (putative)

_IDPredictionOTHERSPmTPCS_Position
LmxM.33.4340OTHER0.9493180.0098040.040878
No Results

  • Fasta :-

    >LmxM.33.4340 MASGGSVIAIKYNGGVLMAADTLLSYGSLAKWPNIPRIKLLGSYSAVCATGSYADFQMMA KQVEDNIERQKMYHNVDELKPSEVFSYLHRSIYQKRCDFEPCLCQMVFIGARDSETFLAA VDDVGTRWEDDCVATGYGAFIALPLLRQALEKNPGGLSRVQAEQILTDCLRVLFYRECRS INKFQLADAAGDGVRISEPFDVETNWEYEGFCFEKTAIIR
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/156 Sequence name : 156 Sequence length : 220 VALUES OF COMPUTED PARAMETERS Coef20 : 3.823 CoefTot : -0.950 ChDiff : -6 ZoneTo : 54 KR : 4 DE : 1 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.029 1.141 0.106 0.508 MesoH : -0.574 0.281 -0.341 0.180 MuHd_075 : 23.452 18.016 6.271 4.491 MuHd_095 : 13.757 12.873 4.155 4.080 MuHd_100 : 14.037 15.524 4.602 4.247 MuHd_105 : 22.566 16.517 6.147 4.645 Hmax_075 : 14.233 11.200 2.540 5.960 Hmax_095 : 4.375 11.500 2.821 3.351 Hmax_100 : 10.900 16.400 1.919 4.720 Hmax_105 : 10.967 18.400 3.284 6.120 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8890 0.1110 DFMC : 0.7833 0.2167
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 220 LmxM.33.4340 MASGGSVIAIKYNGGVLMAADTLLSYGSLAKWPNIPRIKLLGSYSAVCATGSYADFQMMAKQVEDNIERQKMYHNVDELK 80 PSEVFSYLHRSIYQKRCDFEPCLCQMVFIGARDSETFLAAVDDVGTRWEDDCVATGYGAFIALPLLRQALEKNPGGLSRV 160 QAEQILTDCLRVLFYRECRSINKFQLADAAGDGVRISEPFDVETNWEYEGFCFEKTAIIR 240 ................................................................................ 80 ................................................................................ 160 ............................................................ 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmxM.33.4340 11 GSVIAIK|YN 0.099 . LmxM.33.4340 31 SYGSLAK|WP 0.058 . LmxM.33.4340 37 KWPNIPR|IK 0.067 . LmxM.33.4340 39 PNIPRIK|LL 0.064 . LmxM.33.4340 61 DFQMMAK|QV 0.089 . LmxM.33.4340 69 VEDNIER|QK 0.071 . LmxM.33.4340 71 DNIERQK|MY 0.065 . LmxM.33.4340 80 HNVDELK|PS 0.061 . LmxM.33.4340 90 VFSYLHR|SI 0.211 . LmxM.33.4340 95 HRSIYQK|RC 0.071 . LmxM.33.4340 96 RSIYQKR|CD 0.153 . LmxM.33.4340 112 MVFIGAR|DS 0.122 . LmxM.33.4340 127 VDDVGTR|WE 0.088 . LmxM.33.4340 147 IALPLLR|QA 0.096 . LmxM.33.4340 152 LRQALEK|NP 0.070 . LmxM.33.4340 159 NPGGLSR|VQ 0.097 . LmxM.33.4340 171 ILTDCLR|VL 0.075 . LmxM.33.4340 176 LRVLFYR|EC 0.093 . LmxM.33.4340 179 LFYRECR|SI 0.402 . LmxM.33.4340 183 ECRSINK|FQ 0.057 . LmxM.33.4340 195 AAGDGVR|IS 0.080 . LmxM.33.4340 215 EGFCFEK|TA 0.069 . LmxM.33.4340 220 EKTAIIR|-- 0.085 . ____________________________^_________________

  • Fasta :-

    >LmxM.33.4340 ATGGCGTCTGGCGGATCTGTCATCGCAATTAAGTACAACGGCGGTGTGCTGATGGCGGCG GACACGCTGCTGTCCTACGGGTCTCTCGCCAAGTGGCCCAACATCCCGCGCATCAAGCTC CTCGGCAGCTACTCCGCCGTGTGCGCCACAGGCAGCTACGCCGACTTCCAGATGATGGCC AAGCAGGTGGAGGACAACATTGAGCGCCAGAAGATGTACCACAACGTGGACGAGTTGAAG CCTAGTGAGGTGTTCAGCTACCTGCACCGCTCCATCTACCAGAAGCGCTGCGACTTCGAG CCGTGCCTGTGCCAGATGGTCTTCATTGGCGCCCGCGACAGTGAGACGTTTCTGGCGGCC GTGGACGACGTCGGCACGCGCTGGGAGGACGACTGCGTCGCGACCGGCTACGGCGCGTTC ATCGCACTGCCGCTGCTGCGGCAGGCTCTGGAGAAGAACCCGGGTGGCTTGTCGCGGGTC CAGGCGGAGCAGATCCTCACTGACTGCCTGCGTGTGCTCTTCTACCGCGAGTGCCGCTCC ATCAACAAGTTCCAGCTGGCTGACGCCGCCGGCGACGGCGTGCGCATCAGCGAGCCCTTC GACGTGGAGACGAACTGGGAGTACGAGGGCTTCTGCTTCGAGAAGACCGCCATCATCCGC TGA
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  • Fasta :-

    MASGGSVIAIKYNGGVLMAADTLLSYGSLAKWPNIPRIKLLGSYSAVCATGSYADFQMMA KQVEDNIERQKMYHNVDELKPSEVFSYLHRSIYQKRCDFEPCLCQMVFIGARDSETFLAA VDDVGTRWEDDCVATGYGAFIALPLLRQALEKNPGGLSRVQAEQILTDCLRVLFYRECRS INKFQLADAAGDGVRISEPFDVETNWEYEGFCFEKTAIIR

  • title: active site
  • coordinates: G5,D21,L23,R37,Y137,E177,S180,I181
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Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India