LmxM.34.1380 | mitochondrial processing peptidase, beta subunit, putative

_IDPredictionOTHERSPmTPCS_Position
LmxM.34.1380mTP0.4781850.0018130.520001CS pos: 26-27. FRE-VL. Pr: 0.2798
No Results

  • Fasta :-

    >LmxM.34.1380 MSVSFSTLVQRARPASNHATSAAFREVLSKIPPTNVSTLGNGVRVACEENPLSKLATVGV WMDAGSRYEPIAYAGTARVLEKCGFLGTKNQSREQIMKAVEELGGQLEVNVGREQTYLYM KVTKENTDRAVGLLADVVRNARMEDADIVKARAMVHQDQRLFEERPDDLVMDNLHRCAFD STPYGVGTPLYGTEEGVKKVTAEQMCNYRASTLAGNRVVVVGSGGVDHTALEKAAQSYFG DLPKTPEKATAVIPESRYVGGEYRLWNLRYKTVNVAWGFETCGAACEDNVPLALACEIPG SFHRSQHELGQHAMHRVLKTFSSLDHSTPTNTHFNEKSIETANPFLHSYKDVGLCGMYVV GRQAMGGPGDGGVIVEVLQYTIAEWCRIAQKMLHDNELAQAKVNMKAQLLFNMDGSANSA KDIGRQVLHYGRRVPLTEMYDRIDDTTASNIQEVLQHYFYGRKPVYSYLGYISSIPNYDW TQHWSYKYWY
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/441 Sequence name : 441 Sequence length : 490 VALUES OF COMPUTED PARAMETERS Coef20 : 4.678 CoefTot : 0.135 ChDiff : -3 ZoneTo : 47 KR : 5 DE : 1 CleavSite : 15 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.524 1.065 0.031 0.446 MesoH : -0.704 0.133 -0.400 0.169 MuHd_075 : 35.126 21.358 9.576 7.990 MuHd_095 : 33.657 26.253 10.148 7.932 MuHd_100 : 31.390 24.226 9.575 7.397 MuHd_105 : 25.385 25.414 7.641 7.641 Hmax_075 : 11.900 17.383 2.912 5.787 Hmax_095 : 12.900 17.150 1.762 5.547 Hmax_100 : 12.400 14.400 2.293 4.820 Hmax_105 : -1.600 5.337 -1.305 1.645 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.1640 0.8360 DFMC : 0.1831 0.8169 This protein is probably imported in mitochondria. f(Ser) = 0.1489 f(Arg) = 0.0851 CMi = 0.78740 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 490 LmxM.34.1380 MSVSFSTLVQRARPASNHATSAAFREVLSKIPPTNVSTLGNGVRVACEENPLSKLATVGVWMDAGSRYEPIAYAGTARVL 80 EKCGFLGTKNQSREQIMKAVEELGGQLEVNVGREQTYLYMKVTKENTDRAVGLLADVVRNARMEDADIVKARAMVHQDQR 160 LFEERPDDLVMDNLHRCAFDSTPYGVGTPLYGTEEGVKKVTAEQMCNYRASTLAGNRVVVVGSGGVDHTALEKAAQSYFG 240 DLPKTPEKATAVIPESRYVGGEYRLWNLRYKTVNVAWGFETCGAACEDNVPLALACEIPGSFHRSQHELGQHAMHRVLKT 320 FSSLDHSTPTNTHFNEKSIETANPFLHSYKDVGLCGMYVVGRQAMGGPGDGGVIVEVLQYTIAEWCRIAQKMLHDNELAQ 400 AKVNMKAQLLFNMDGSANSAKDIGRQVLHYGRRVPLTEMYDRIDDTTASNIQEVLQHYFYGRKPVYSYLGYISSIPNYDW 480 TQHWSYKYWY 560 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 .......... 560 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmxM.34.1380 11 FSTLVQR|AR 0.084 . LmxM.34.1380 13 TLVQRAR|PA 0.136 . LmxM.34.1380 25 ATSAAFR|EV 0.129 . LmxM.34.1380 30 FREVLSK|IP 0.065 . LmxM.34.1380 44 TLGNGVR|VA 0.104 . LmxM.34.1380 54 EENPLSK|LA 0.074 . LmxM.34.1380 67 WMDAGSR|YE 0.068 . LmxM.34.1380 78 AYAGTAR|VL 0.118 . LmxM.34.1380 82 TARVLEK|CG 0.071 . LmxM.34.1380 89 CGFLGTK|NQ 0.066 . LmxM.34.1380 93 GTKNQSR|EQ 0.083 . LmxM.34.1380 98 SREQIMK|AV 0.129 . LmxM.34.1380 113 LEVNVGR|EQ 0.080 . LmxM.34.1380 121 QTYLYMK|VT 0.060 . LmxM.34.1380 124 LYMKVTK|EN 0.068 . LmxM.34.1380 129 TKENTDR|AV 0.142 . LmxM.34.1380 139 LLADVVR|NA 0.113 . LmxM.34.1380 142 DVVRNAR|ME 0.188 . LmxM.34.1380 150 EDADIVK|AR 0.059 . LmxM.34.1380 152 ADIVKAR|AM 0.135 . LmxM.34.1380 160 MVHQDQR|LF 0.089 . LmxM.34.1380 165 QRLFEER|PD 0.097 . LmxM.34.1380 176 VMDNLHR|CA 0.099 . LmxM.34.1380 198 GTEEGVK|KV 0.071 . LmxM.34.1380 199 TEEGVKK|VT 0.103 . LmxM.34.1380 209 EQMCNYR|AS 0.086 . LmxM.34.1380 217 STLAGNR|VV 0.081 . LmxM.34.1380 233 DHTALEK|AA 0.062 . LmxM.34.1380 244 YFGDLPK|TP 0.064 . LmxM.34.1380 248 LPKTPEK|AT 0.069 . LmxM.34.1380 257 AVIPESR|YV 0.161 . LmxM.34.1380 264 YVGGEYR|LW 0.074 . LmxM.34.1380 269 YRLWNLR|YK 0.085 . LmxM.34.1380 271 LWNLRYK|TV 0.086 . LmxM.34.1380 304 IPGSFHR|SQ 0.178 . LmxM.34.1380 316 GQHAMHR|VL 0.084 . LmxM.34.1380 319 AMHRVLK|TF 0.161 . LmxM.34.1380 337 NTHFNEK|SI 0.114 . LmxM.34.1380 350 PFLHSYK|DV 0.111 . LmxM.34.1380 362 GMYVVGR|QA 0.156 . LmxM.34.1380 387 TIAEWCR|IA 0.139 . LmxM.34.1380 391 WCRIAQK|ML 0.075 . LmxM.34.1380 402 NELAQAK|VN 0.067 . LmxM.34.1380 406 QAKVNMK|AQ 0.058 . LmxM.34.1380 421 GSANSAK|DI 0.155 . LmxM.34.1380 425 SAKDIGR|QV 0.133 . LmxM.34.1380 432 QVLHYGR|RV 0.078 . LmxM.34.1380 433 VLHYGRR|VP 0.098 . LmxM.34.1380 442 LTEMYDR|ID 0.079 . LmxM.34.1380 462 QHYFYGR|KP 0.074 . LmxM.34.1380 463 HYFYGRK|PV 0.092 . LmxM.34.1380 487 TQHWSYK|YW 0.096 . ____________________________^_________________

  • Fasta :-

    >LmxM.34.1380 ATGTCGGTTAGCTTTTCCACCCTGGTGCAGCGCGCCCGTCCGGCGTCGAACCACGCGACC TCGGCTGCGTTCCGCGAAGTCCTCAGCAAGATCCCGCCCACCAATGTGTCGACGCTCGGC AACGGCGTGCGCGTCGCGTGCGAGGAGAATCCGCTATCCAAGCTCGCGACGGTCGGCGTG TGGATGGACGCCGGGTCCCGGTACGAGCCGATTGCCTACGCCGGTACGGCCCGCGTGCTG GAGAAGTGCGGCTTCCTTGGCACAAAGAACCAGTCACGCGAGCAGATCATGAAGGCTGTC GAGGAGCTTGGCGGCCAGCTGGAGGTGAACGTGGGTCGCGAGCAGACTTACCTGTACATG AAGGTCACCAAGGAGAACACTGACCGCGCTGTCGGTCTGCTGGCTGACGTGGTGCGCAAC GCTCGCATGGAGGATGCCGACATCGTGAAGGCACGCGCCATGGTGCACCAGGATCAGCGC CTGTTTGAGGAGCGCCCCGATGACCTCGTCATGGACAACTTGCACCGCTGCGCTTTCGAC AGCACCCCGTACGGTGTGGGCACTCCGCTCTACGGTACGGAGGAAGGCGTGAAGAAGGTG ACGGCCGAGCAGATGTGCAACTACCGCGCCAGCACCCTCGCCGGCAACCGCGTCGTTGTT GTTGGCAGCGGTGGTGTCGACCACACCGCCCTGGAGAAGGCCGCCCAGAGCTACTTTGGT GACCTCCCCAAGACTCCTGAGAAGGCTACCGCCGTGATTCCAGAGTCCCGCTACGTCGGT GGTGAGTACCGCCTGTGGAACCTGCGCTACAAAACGGTGAACGTGGCCTGGGGCTTCGAG ACCTGCGGCGCCGCGTGTGAGGACAATGTCCCGCTCGCCCTCGCGTGCGAGATTCCGGGC TCCTTCCACCGTTCCCAGCACGAGCTCGGTCAGCACGCCATGCATCGCGTGCTGAAGACC TTCTCCTCGCTCGATCACTCCACCCCGACCAACACCCACTTCAACGAGAAGTCCATCGAG ACGGCGAACCCGTTCCTACACAGCTACAAGGACGTTGGCCTGTGCGGCATGTACGTGGTG GGCCGCCAGGCGATGGGTGGCCCGGGCGACGGTGGTGTGATTGTGGAGGTGCTGCAGTAC ACGATCGCTGAATGGTGCCGTATTGCGCAGAAGATGCTGCACGACAACGAGCTCGCGCAG GCGAAGGTGAACATGAAGGCGCAGTTGCTCTTTAACATGGACGGTAGCGCCAACTCCGCC AAGGATATTGGCCGCCAGGTGCTGCACTACGGCCGGCGCGTGCCGCTGACGGAGATGTAC GACCGCATCGACGACACCACCGCTAGCAACATCCAGGAGGTTCTCCAGCACTACTTCTAC GGCCGCAAGCCCGTGTACAGCTATCTCGGCTACATCTCGTCCATTCCCAACTACGATTGG ACGCAGCACTGGTCGTACAAGTACTGGTATTAG
  • Download Fasta

  • Fasta :-

    MSVSFSTLVQRARPASNHATSAAFREVLSKIPPTNVSTLGNGVRVACEENPLSKLATVGV WMDAGSRYEPIAYAGTARVLEKCGFLGTKNQSREQIMKAVEELGGQLEVNVGREQTYLYM KVTKENTDRAVGLLADVVRNARMEDADIVKARAMVHQDQRLFEERPDDLVMDNLHRCAFD STPYGVGTPLYGTEEGVKKVTAEQMCNYRASTLAGNRVVVVGSGGVDHTALEKAAQSYFG DLPKTPEKATAVIPESRYVGGEYRLWNLRYKTVNVAWGFETCGAACEDNVPLALACEIPG SFHRSQHELGQHAMHRVLKTFSSLDHSTPTNTHFNEKSIETANPFLHSYKDVGLCGMYVV GRQAMGGPGDGGVIVEVLQYTIAEWCRIAQKMLHDNELAQAKVNMKAQLLFNMDGSANSA KDIGRQVLHYGRRVPLTEMYDRIDDTTASNIQEVLQHYFYGRKPVYSYLGYISSIPNYDW TQHWSYKYWY

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IDSitePeptideScoreMethod
LmxM.34.1380419 SGSANSAKDI0.996unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India