LmxM.34.1980 | hypothetical protein, conserved

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:        

  • Computed_GO_Functions:        

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:  GO:0030964      GO:0005739      

  • Curated_GO_Components:  NADH dehydrogenase complex      mitochondrion      

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
LmxM.34.1980mTP0.1556350.0011070.843258CS pos: 23-24. TRF-KW. Pr: 0.1441
No Results

  • Fasta :-

    >LmxM.34.1980 MLRRSSVVLARFQPYSMAVQTRFKWRHKETDRWRRLMDATCFQVDWLGQTAGPNFAQYSG HWTHMITCAHVITPWDYPNFYPPQGPTRFVSHITLADTMTQIRLVSMQGNAVYKHFTSNQ HVFVHSNPRLDLCVLHPEQNLKRSGEMKMMWMQNEGYILRPRLEINETLKVGDHVWVYGM SAHESLFDEEKGPEPLMIPTGVRARVHSVTREHFFLDTMALEDNPDRGRIQMGMCGSVVM RNGKCVGMLTATVHEESDCKELAGTAMCTYSSDIFEFLLEVEKQMKNPVARQSQEETRFE QRRRAEGCVVKEYKHWELDESRTARHIPVPVSLWHMEEKWVTEEDYMNSAVFGRSGAFNQ ETQESALGYDMNSAKTNGDRPGDIDSFMSTTATGKPVMQGERKDYSPTGVYANAEEFKNK DVWDYNVSSEMRSLFNETVDSKDAESLNMMRKSLENIRAQRAMEKMKETVMNRTESGFDP LKSYGHYGGSADAGAANFSPEYASAHKGGGDAYSYAQAAQQAAREQPGDHASPASSPPPP PPNESVIDRKKRERREAEAEYQEELRRRHGQRAVPFGDKDLGGFWERR
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/466 Sequence name : 466 Sequence length : 588 VALUES OF COMPUTED PARAMETERS Coef20 : 4.855 CoefTot : 0.352 ChDiff : -8 ZoneTo : 28 KR : 7 DE : 0 CleavSite : 13 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.918 0.824 0.010 0.401 MesoH : -0.136 0.018 -0.385 0.197 MuHd_075 : 21.200 15.676 5.218 6.426 MuHd_095 : 32.777 11.037 5.226 5.740 MuHd_100 : 29.669 14.047 5.670 5.560 MuHd_105 : 27.467 14.525 6.218 6.258 Hmax_075 : 7.467 8.750 -0.265 3.838 Hmax_095 : 11.550 8.313 -0.008 3.036 Hmax_100 : 16.500 15.700 2.877 5.240 Hmax_105 : 14.400 16.700 2.318 5.680 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0444 0.9556 DFMC : 0.0580 0.9420 This protein is probably imported in mitochondria. f(Ser) = 0.1071 f(Arg) = 0.1786 CMi = 0.33482 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 588 LmxM.34.1980 MLRRSSVVLARFQPYSMAVQTRFKWRHKETDRWRRLMDATCFQVDWLGQTAGPNFAQYSGHWTHMITCAHVITPWDYPNF 80 YPPQGPTRFVSHITLADTMTQIRLVSMQGNAVYKHFTSNQHVFVHSNPRLDLCVLHPEQNLKRSGEMKMMWMQNEGYILR 160 PRLEINETLKVGDHVWVYGMSAHESLFDEEKGPEPLMIPTGVRARVHSVTREHFFLDTMALEDNPDRGRIQMGMCGSVVM 240 RNGKCVGMLTATVHEESDCKELAGTAMCTYSSDIFEFLLEVEKQMKNPVARQSQEETRFEQRRRAEGCVVKEYKHWELDE 320 SRTARHIPVPVSLWHMEEKWVTEEDYMNSAVFGRSGAFNQETQESALGYDMNSAKTNGDRPGDIDSFMSTTATGKPVMQG 400 ERKDYSPTGVYANAEEFKNKDVWDYNVSSEMRSLFNETVDSKDAESLNMMRKSLENIRAQRAMEKMKETVMNRTESGFDP 480 LKSYGHYGGSADAGAANFSPEYASAHKGGGDAYSYAQAAQQAAREQPGDHASPASSPPPPPPNESVIDRKKRERREAEAE 560 YQEELRRRHGQRAVPFGDKDLGGFWERR 640 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 .......................................................................P..P..... 560 ............................ 640 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 2 Name Pos Context Score Pred ____________________________v_________________ LmxM.34.1980 3 ----MLR|RS 0.092 . LmxM.34.1980 4 ---MLRR|SS 0.156 . LmxM.34.1980 11 SSVVLAR|FQ 0.103 . LmxM.34.1980 22 SMAVQTR|FK 0.164 . LmxM.34.1980 24 AVQTRFK|WR 0.064 . LmxM.34.1980 26 QTRFKWR|HK 0.135 . LmxM.34.1980 28 RFKWRHK|ET 0.072 . LmxM.34.1980 32 RHKETDR|WR 0.075 . LmxM.34.1980 34 KETDRWR|RL 0.091 . LmxM.34.1980 35 ETDRWRR|LM 0.406 . LmxM.34.1980 88 PPQGPTR|FV 0.194 . LmxM.34.1980 103 DTMTQIR|LV 0.138 . LmxM.34.1980 114 QGNAVYK|HF 0.080 . LmxM.34.1980 129 FVHSNPR|LD 0.079 . LmxM.34.1980 142 HPEQNLK|RS 0.072 . LmxM.34.1980 143 PEQNLKR|SG 0.321 . LmxM.34.1980 148 KRSGEMK|MM 0.095 . LmxM.34.1980 160 NEGYILR|PR 0.074 . LmxM.34.1980 162 GYILRPR|LE 0.069 . LmxM.34.1980 170 EINETLK|VG 0.061 . LmxM.34.1980 191 SLFDEEK|GP 0.065 . LmxM.34.1980 203 MIPTGVR|AR 0.071 . LmxM.34.1980 205 PTGVRAR|VH 0.095 . LmxM.34.1980 211 RVHSVTR|EH 0.085 . LmxM.34.1980 227 LEDNPDR|GR 0.090 . LmxM.34.1980 229 DNPDRGR|IQ 0.075 . LmxM.34.1980 241 CGSVVMR|NG 0.104 . LmxM.34.1980 244 VVMRNGK|CV 0.253 . LmxM.34.1980 260 HEESDCK|EL 0.057 . LmxM.34.1980 283 FLLEVEK|QM 0.052 . LmxM.34.1980 286 EVEKQMK|NP 0.061 . LmxM.34.1980 291 MKNPVAR|QS 0.162 . LmxM.34.1980 298 QSQEETR|FE 0.092 . LmxM.34.1980 302 ETRFEQR|RR 0.071 . LmxM.34.1980 303 TRFEQRR|RA 0.246 . LmxM.34.1980 304 RFEQRRR|AE 0.174 . LmxM.34.1980 311 AEGCVVK|EY 0.065 . LmxM.34.1980 314 CVVKEYK|HW 0.070 . LmxM.34.1980 322 WELDESR|TA 0.084 . LmxM.34.1980 325 DESRTAR|HI 0.324 . LmxM.34.1980 339 LWHMEEK|WV 0.095 . LmxM.34.1980 354 NSAVFGR|SG 0.169 . LmxM.34.1980 375 YDMNSAK|TN 0.080 . LmxM.34.1980 380 AKTNGDR|PG 0.079 . LmxM.34.1980 395 STTATGK|PV 0.092 . LmxM.34.1980 402 PVMQGER|KD 0.064 . LmxM.34.1980 403 VMQGERK|DY 0.112 . LmxM.34.1980 418 ANAEEFK|NK 0.067 . LmxM.34.1980 420 AEEFKNK|DV 0.131 . LmxM.34.1980 432 NVSSEMR|SL 0.155 . LmxM.34.1980 442 NETVDSK|DA 0.074 . LmxM.34.1980 451 ESLNMMR|KS 0.072 . LmxM.34.1980 452 SLNMMRK|SL 0.207 . LmxM.34.1980 458 KSLENIR|AQ 0.096 . LmxM.34.1980 461 ENIRAQR|AM 0.289 . LmxM.34.1980 465 AQRAMEK|MK 0.076 . LmxM.34.1980 467 RAMEKMK|ET 0.074 . LmxM.34.1980 473 KETVMNR|TE 0.074 . LmxM.34.1980 482 SGFDPLK|SY 0.094 . LmxM.34.1980 507 EYASAHK|GG 0.070 . LmxM.34.1980 524 AAQQAAR|EQ 0.084 . LmxM.34.1980 549 NESVIDR|KK 0.105 . LmxM.34.1980 550 ESVIDRK|KR 0.081 . LmxM.34.1980 551 SVIDRKK|RE 0.078 . LmxM.34.1980 552 VIDRKKR|ER 0.566 *ProP* LmxM.34.1980 554 DRKKRER|RE 0.099 . LmxM.34.1980 555 RKKRERR|EA 0.726 *ProP* LmxM.34.1980 566 EYQEELR|RR 0.077 . LmxM.34.1980 567 YQEELRR|RH 0.104 . LmxM.34.1980 568 QEELRRR|HG 0.131 . LmxM.34.1980 572 RRRHGQR|AV 0.198 . LmxM.34.1980 579 AVPFGDK|DL 0.065 . LmxM.34.1980 587 LGGFWER|R- 0.081 . LmxM.34.1980 588 GGFWERR|-- 0.142 . ____________________________^_________________

  • Fasta :-

    >LmxM.34.1980 ATGCTGCGCCGTAGCTCAGTCGTGCTGGCGAGGTTCCAGCCGTACTCGATGGCGGTGCAA ACCCGGTTTAAATGGCGGCACAAGGAGACGGACCGGTGGCGGCGGCTGATGGACGCGACG TGCTTCCAAGTTGATTGGCTCGGCCAGACGGCCGGCCCGAACTTCGCGCAGTACAGCGGG CACTGGACGCACATGATCACCTGCGCGCACGTGATCACGCCGTGGGATTACCCCAACTTC TACCCACCGCAGGGGCCAACCCGATTCGTCTCGCACATTACTCTGGCGGACACCATGACG CAGATTCGGCTCGTCTCGATGCAGGGCAATGCCGTGTACAAGCACTTCACGTCAAATCAA CACGTCTTCGTGCATTCGAACCCGCGGCTGGACCTGTGCGTCCTGCACCCGGAGCAAAAT CTGAAGCGCAGTGGCGAGATGAAGATGATGTGGATGCAGAACGAAGGGTACATTTTACGT CCGCGCCTGGAGATCAACGAAACGCTGAAGGTCGGCGATCACGTCTGGGTGTACGGCATG TCAGCGCATGAGTCGCTGTTTGATGAGGAAAAGGGGCCAGAGCCTCTCATGATCCCTACC GGCGTCCGCGCTCGCGTGCACAGCGTCACGCGCGAGCACTTCTTCCTGGACACAATGGCA CTCGAGGACAACCCAGATCGTGGCCGCATCCAGATGGGCATGTGCGGCTCCGTCGTGATG CGCAACGGCAAGTGTGTCGGCATGCTGACGGCGACGGTGCACGAAGAGAGCGACTGTAAA GAGCTCGCAGGGACGGCCATGTGCACGTATTCGTCTGACATCTTCGAGTTCCTGCTGGAG GTGGAAAAGCAAATGAAGAACCCCGTTGCGCGTCAGAGCCAGGAGGAGACCCGCTTTGAG CAGCGGCGCCGCGCCGAGGGGTGTGTGGTGAAGGAGTACAAGCACTGGGAGCTGGACGAG AGCCGCACGGCCCGCCACATCCCCGTCCCTGTTTCGCTCTGGCATATGGAGGAGAAGTGG GTGACGGAGGAGGATTACATGAACAGCGCCGTCTTTGGCCGCAGCGGTGCCTTTAACCAA GAAACGCAGGAGAGCGCGCTGGGCTACGACATGAACTCCGCCAAGACAAATGGCGACCGC CCAGGTGACATCGACTCCTTTATGTCGACCACGGCGACTGGCAAGCCTGTGATGCAAGGC GAGCGAAAGGACTACAGCCCGACCGGCGTGTACGCGAACGCGGAGGAGTTCAAGAACAAG GATGTGTGGGACTACAACGTGAGCTCCGAGATGCGCTCTCTGTTCAACGAAACAGTCGAC AGCAAGGACGCTGAAAGCCTCAACATGATGCGCAAGTCGCTTGAGAACATCCGTGCGCAG CGGGCGATGGAGAAGATGAAGGAGACCGTGATGAACCGCACGGAGTCGGGCTTCGATCCG CTGAAGAGCTACGGCCACTACGGCGGGAGCGCCGACGCCGGGGCCGCCAACTTCAGCCCA GAGTACGCTTCAGCCCACAAAGGTGGTGGGGACGCCTACAGTTACGCGCAAGCAGCTCAG CAGGCGGCGCGCGAGCAGCCAGGGGACCATGCATCACCTGCGTCGTCTCCGCCGCCGCCG CCGCCAAATGAGTCCGTTATAGATCGAAAGAAGCGCGAGCGACGTGAGGCGGAGGCCGAG TATCAGGAGGAGCTGCGCCGTCGCCATGGGCAGCGCGCCGTTCCCTTCGGCGACAAGGAC CTCGGCGGCTTCTGGGAGCGACGCTGA
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  • Fasta :-

    MLRRSSVVLARFQPYSMAVQTRFKWRHKETDRWRRLMDATCFQVDWLGQTAGPNFAQYSG HWTHMITCAHVITPWDYPNFYPPQGPTRFVSHITLADTMTQIRLVSMQGNAVYKHFTSNQ HVFVHSNPRLDLCVLHPEQNLKRSGEMKMMWMQNEGYILRPRLEINETLKVGDHVWVYGM SAHESLFDEEKGPEPLMIPTGVRARVHSVTREHFFLDTMALEDNPDRGRIQMGMCGSVVM RNGKCVGMLTATVHEESDCKELAGTAMCTYSSDIFEFLLEVEKQMKNPVARQSQEETRFE QRRRAEGCVVKEYKHWELDESRTARHIPVPVSLWHMEEKWVTEEDYMNSAVFGRSGAFNQ ETQESALGYDMNSAKTNGDRPGDIDSFMSTTATGKPVMQGERKDYSPTGVYANAEEFKNK DVWDYNVSSEMRSLFNETVDSKDAESLNMMRKSLENIRAQRAMEKMKETVMNRTESGFDP LKSYGHYGGSADAGAANFSPEYASAHKGGGDAYSYAQAAQQAAREQPGDHASPASSPPPP PPNESVIDRKKRERREAEAEYQEELRRRHGQRAVPFGDKDLGGFWERR

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmxM.34.1980293 SVARQSQEET0.998unspLmxM.34.1980293 SVARQSQEET0.998unspLmxM.34.1980293 SVARQSQEET0.998unspLmxM.34.1980346 YTEEDYMNSA0.993unspLmxM.34.1980453 SMMRKSLENI0.991unspLmxM.34.1980476 SNRTESGFDP0.996unspLmxM.34.19806 SLRRSSVVLA0.995unspLmxM.34.1980208 SARVHSVTRE0.996unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India