LmxM.34.2800 | Alpha/beta hydrolase family, putative

  • Computed_GO_Component_IDs:        

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  • Computed_GO_Function_IDs:        

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  • Curated_GO_Component_IDs:  GO:0005737      

  • Curated_GO_Components:  cytoplasm      

  • Curated_GO_Function_IDs:        

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  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
LmxM.34.2800OTHER0.9533400.0390320.007628
No Results

  • Fasta :-

    >LmxM.34.2800 MIFGSALVVVVAAINSSANRYLPAKLKLFAPSVGWFIMNVFIARGPLVWYVCSLAIQGLF ATLLFMTLGFKSDLVSRVVILPFLVTAMAAWAKEILPSVGGWTTVAVTLTQLWSILGGII IHACYPANILQALERQDARNRRVRAVARTLVRKKDKSVDVCMVPSLDGTAELQTLAVKQA YETSRWIVYCGGNAEFLENSLSDIHVISDVLKAHVILYNPRGISFSTGYLSQLGELVEDA AAVARAYIEKERIDERNLLFFGHSIGGGTAAQVVAECYPRASLVLDRTFSSMSDAAVGFS YLTPSVTRKVFPWFVGDLHTLAGWDNVRHNRKLVLYSKQDEVIKFDISSIARLPQFQKDG ADADKAAELFGAPPSHHNSLLSAFDNYEEVCVRMSKMFFM
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/98 Sequence name : 98 Sequence length : 400 VALUES OF COMPUTED PARAMETERS Coef20 : 4.825 CoefTot : -0.274 ChDiff : 4 ZoneTo : 133 KR : 7 DE : 2 CleavSite : 30 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.065 2.071 0.328 0.729 MesoH : 1.098 1.369 0.058 0.540 MuHd_075 : 31.394 27.731 9.740 9.072 MuHd_095 : 24.390 24.003 7.753 6.723 MuHd_100 : 25.139 22.864 7.121 6.369 MuHd_105 : 21.080 21.186 5.966 6.011 Hmax_075 : 12.600 27.500 5.495 8.100 Hmax_095 : 19.600 24.762 4.317 4.533 Hmax_100 : 20.300 24.200 4.059 7.720 Hmax_105 : 15.487 20.533 2.833 6.965 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.3892 0.6108 DFMC : 0.0442 0.9558 This protein is probably imported in mitochondria. f(Ser) = 0.0677 f(Arg) = 0.0226 CMi = 0.66617 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 400 LmxM.34.2800 MIFGSALVVVVAAINSSANRYLPAKLKLFAPSVGWFIMNVFIARGPLVWYVCSLAIQGLFATLLFMTLGFKSDLVSRVVI 80 LPFLVTAMAAWAKEILPSVGGWTTVAVTLTQLWSILGGIIIHACYPANILQALERQDARNRRVRAVARTLVRKKDKSVDV 160 CMVPSLDGTAELQTLAVKQAYETSRWIVYCGGNAEFLENSLSDIHVISDVLKAHVILYNPRGISFSTGYLSQLGELVEDA 240 AAVARAYIEKERIDERNLLFFGHSIGGGTAAQVVAECYPRASLVLDRTFSSMSDAAVGFSYLTPSVTRKVFPWFVGDLHT 320 LAGWDNVRHNRKLVLYSKQDEVIKFDISSIARLPQFQKDGADADKAAELFGAPPSHHNSLLSAFDNYEEVCVRMSKMFFM 400 ................................................................................ 80 ...............................................................P................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ LmxM.34.2800 20 INSSANR|YL 0.140 . LmxM.34.2800 25 NRYLPAK|LK 0.063 . LmxM.34.2800 27 YLPAKLK|LF 0.066 . LmxM.34.2800 44 MNVFIAR|GP 0.082 . LmxM.34.2800 71 FMTLGFK|SD 0.061 . LmxM.34.2800 77 KSDLVSR|VV 0.084 . LmxM.34.2800 93 AMAAWAK|EI 0.074 . LmxM.34.2800 135 ILQALER|QD 0.086 . LmxM.34.2800 139 LERQDAR|NR 0.073 . LmxM.34.2800 141 RQDARNR|RV 0.115 . LmxM.34.2800 142 QDARNRR|VR 0.353 . LmxM.34.2800 144 ARNRRVR|AV 0.531 *ProP* LmxM.34.2800 148 RVRAVAR|TL 0.096 . LmxM.34.2800 152 VARTLVR|KK 0.090 . LmxM.34.2800 153 ARTLVRK|KD 0.080 . LmxM.34.2800 154 RTLVRKK|DK 0.132 . LmxM.34.2800 156 LVRKKDK|SV 0.147 . LmxM.34.2800 178 LQTLAVK|QA 0.062 . LmxM.34.2800 185 QAYETSR|WI 0.103 . LmxM.34.2800 212 VISDVLK|AH 0.061 . LmxM.34.2800 221 VILYNPR|GI 0.098 . LmxM.34.2800 245 DAAAVAR|AY 0.128 . LmxM.34.2800 250 ARAYIEK|ER 0.072 . LmxM.34.2800 252 AYIEKER|ID 0.088 . LmxM.34.2800 256 KERIDER|NL 0.085 . LmxM.34.2800 280 VAECYPR|AS 0.078 . LmxM.34.2800 287 ASLVLDR|TF 0.084 . LmxM.34.2800 308 LTPSVTR|KV 0.109 . LmxM.34.2800 309 TPSVTRK|VF 0.106 . LmxM.34.2800 328 AGWDNVR|HN 0.082 . LmxM.34.2800 331 DNVRHNR|KL 0.169 . LmxM.34.2800 332 NVRHNRK|LV 0.096 . LmxM.34.2800 338 KLVLYSK|QD 0.064 . LmxM.34.2800 344 KQDEVIK|FD 0.065 . LmxM.34.2800 352 DISSIAR|LP 0.083 . LmxM.34.2800 358 RLPQFQK|DG 0.071 . LmxM.34.2800 365 DGADADK|AA 0.069 . LmxM.34.2800 393 YEEVCVR|MS 0.081 . LmxM.34.2800 396 VCVRMSK|MF 0.117 . ____________________________^_________________

  • Fasta :-

    >LmxM.34.2800 ATGATCTTCGGTTCAGCGCTGGTGGTCGTGGTGGCGGCCATCAACAGCTCTGCCAACCGC TATCTTCCTGCCAAGCTGAAGTTGTTCGCGCCTTCAGTGGGGTGGTTCATCATGAATGTG TTCATTGCCCGAGGCCCTCTCGTGTGGTATGTGTGCTCGTTGGCGATTCAAGGACTGTTT GCCACGCTGCTCTTCATGACTCTCGGCTTCAAGAGCGACCTTGTCTCGCGCGTCGTCATC CTTCCGTTTCTGGTCACGGCGATGGCGGCCTGGGCGAAGGAGATTCTGCCTTCGGTTGGG GGGTGGACTACTGTCGCGGTCACCCTCACGCAGCTCTGGAGCATCCTCGGGGGCATCATA ATCCACGCCTGCTATCCGGCCAACATTCTACAGGCCCTTGAACGGCAGGACGCGCGCAAC CGCCGCGTCCGTGCGGTTGCTCGCACGCTGGTTCGAAAGAAAGATAAGTCTGTCGATGTG TGCATGGTGCCATCACTGGATGGAACGGCCGAACTGCAGACGCTCGCGGTAAAGCAGGCG TATGAGACGTCGCGCTGGATTGTGTACTGCGGCGGCAACGCGGAGTTCCTGGAGAACAGC CTCAGCGATATCCACGTCATCAGCGACGTTCTCAAGGCACATGTGATTCTGTATAACCCA CGCGGCATCAGCTTCAGCACCGGTTATCTCTCGCAGCTCGGCGAATTAGTCGAGGACGCT GCCGCAGTGGCGCGGGCGTACATTGAGAAGGAGAGGATCGATGAGAGAAACCTGCTTTTC TTTGGTCATAGCATCGGCGGCGGTACTGCGGCGCAGGTGGTGGCGGAATGCTACCCGCGT GCGTCCCTCGTGCTGGATCGGACCTTCTCGTCCATGTCGGACGCTGCTGTAGGCTTTTCC TATCTCACCCCCAGCGTCACACGCAAGGTGTTTCCCTGGTTTGTCGGCGACCTTCACACT CTGGCCGGCTGGGACAATGTCAGGCACAACCGAAAGCTCGTCCTCTACTCGAAGCAAGAC GAGGTGATCAAGTTCGACATCTCCTCCATTGCTCGGCTCCCGCAGTTTCAGAAGGATGGC GCGGACGCCGACAAGGCTGCTGAGCTTTTTGGCGCCCCGCCGTCCCACCACAACAGCCTC TTGAGCGCCTTTGACAACTACGAGGAGGTATGTGTTCGCATGAGTAAGATGTTCTTCATG TAA
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  • Fasta :-

    MIFGSALVVVVAAINSSANRYLPAKLKLFAPSVGWFIMNVFIARGPLVWYVCSLAIQGLF ATLLFMTLGFKSDLVSRVVILPFLVTAMAAWAKEILPSVGGWTTVAVTLTQLWSILGGII IHACYPANILQALERQDARNRRVRAVARTLVRKKDKSVDVCMVPSLDGTAELQTLAVKQA YETSRWIVYCGGNAEFLENSLSDIHVISDVLKAHVILYNPRGISFSTGYLSQLGELVEDA AAVARAYIEKERIDERNLLFFGHSIGGGTAAQVVAECYPRASLVLDRTFSSMSDAAVGFS YLTPSVTRKVFPWFVGDLHTLAGWDNVRHNRKLVLYSKQDEVIKFDISSIARLPQFQKDG ADADKAAELFGAPPSHHNSLLSAFDNYEEVCVRMSKMFFM

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Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India