LmxM.34.3840 | proteasome beta 2 subunit, putative

_IDPredictionOTHERSPmTPCS_Position
LmxM.34.3840OTHER0.9997720.0001480.000080
No Results

  • Fasta :-

    >LmxM.34.3840 MPGFDFENVQRNLNLESEGYSAPRTLKTGTTIVGVVYKDGVVLGADTRATEGSIVADKCC RKIHYMAPNIMCCGAGTSADTEAVTNMVSSHLALHRFETGKQSRVLEALTLLKRHLYRYQ GHVSAALVLGGVDVEGPFLATVAPHGSTDRLPFVTMGSGSIAAMAQLEAAYKDNMTCEEA KELVTSAIRKGIFNDPYSGTQVDVCVITKAKTELMIGYDTPNERMHPRQEVMLSPGTTPV LKEEIRHLVDIVDV
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/267 Sequence name : 267 Sequence length : 254 VALUES OF COMPUTED PARAMETERS Coef20 : 2.939 CoefTot : -0.503 ChDiff : -5 ZoneTo : 4 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.571 1.418 0.128 0.589 MesoH : -0.356 0.365 -0.288 0.231 MuHd_075 : 14.881 12.067 4.074 3.542 MuHd_095 : 18.928 10.671 4.334 3.723 MuHd_100 : 20.564 10.578 5.452 4.099 MuHd_105 : 22.538 11.462 6.475 4.678 Hmax_075 : -2.300 2.600 -2.618 2.180 Hmax_095 : -0.350 2.888 -2.432 2.048 Hmax_100 : 6.400 4.500 -0.453 2.970 Hmax_105 : 1.983 6.183 -1.122 3.803 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9805 0.0195 DFMC : 0.9629 0.0371
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 254 LmxM.34.3840 MPGFDFENVQRNLNLESEGYSAPRTLKTGTTIVGVVYKDGVVLGADTRATEGSIVADKCCRKIHYMAPNIMCCGAGTSAD 80 TEAVTNMVSSHLALHRFETGKQSRVLEALTLLKRHLYRYQGHVSAALVLGGVDVEGPFLATVAPHGSTDRLPFVTMGSGS 160 IAAMAQLEAAYKDNMTCEEAKELVTSAIRKGIFNDPYSGTQVDVCVITKAKTELMIGYDTPNERMHPRQEVMLSPGTTPV 240 LKEEIRHLVDIVDV 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 .............. 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmxM.34.3840 11 DFENVQR|NL 0.075 . LmxM.34.3840 24 EGYSAPR|TL 0.096 . LmxM.34.3840 27 SAPRTLK|TG 0.112 . LmxM.34.3840 38 IVGVVYK|DG 0.071 . LmxM.34.3840 48 VLGADTR|AT 0.098 . LmxM.34.3840 58 GSIVADK|CC 0.069 . LmxM.34.3840 61 VADKCCR|KI 0.087 . LmxM.34.3840 62 ADKCCRK|IH 0.077 . LmxM.34.3840 96 SHLALHR|FE 0.098 . LmxM.34.3840 101 HRFETGK|QS 0.076 . LmxM.34.3840 104 ETGKQSR|VL 0.100 . LmxM.34.3840 113 EALTLLK|RH 0.049 . LmxM.34.3840 114 ALTLLKR|HL 0.153 . LmxM.34.3840 118 LKRHLYR|YQ 0.144 . LmxM.34.3840 150 PHGSTDR|LP 0.075 . LmxM.34.3840 172 QLEAAYK|DN 0.083 . LmxM.34.3840 181 MTCEEAK|EL 0.065 . LmxM.34.3840 189 LVTSAIR|KG 0.062 . LmxM.34.3840 190 VTSAIRK|GI 0.104 . LmxM.34.3840 209 DVCVITK|AK 0.060 . LmxM.34.3840 211 CVITKAK|TE 0.059 . LmxM.34.3840 224 YDTPNER|MH 0.085 . LmxM.34.3840 228 NERMHPR|QE 0.090 . LmxM.34.3840 242 GTTPVLK|EE 0.060 . LmxM.34.3840 246 VLKEEIR|HL 0.095 . ____________________________^_________________

  • Fasta :-

    >LmxM.34.3840 ATGCCCGGATTCGACTTTGAAAATGTTCAGCGTAACCTCAACCTGGAGAGTGAGGGCTAC TCTGCGCCACGAACGCTGAAGACCGGTACGACTATCGTGGGTGTCGTTTACAAGGACGGC GTTGTGCTCGGAGCTGACACTCGTGCTACCGAGGGCAGTATTGTAGCGGACAAGTGCTGC CGCAAGATCCACTACATGGCTCCGAATATCATGTGCTGCGGTGCCGGCACGTCGGCAGAC ACAGAGGCCGTGACGAATATGGTGTCCTCGCACCTGGCTCTGCACCGTTTCGAGACAGGC AAGCAGTCTCGCGTCCTCGAGGCACTGACGCTGCTGAAGCGCCACTTGTACCGCTACCAG GGCCACGTCAGCGCAGCGCTTGTGCTCGGTGGCGTGGATGTGGAGGGCCCGTTCTTAGCT ACCGTCGCCCCACACGGCAGCACCGATCGTCTGCCCTTCGTGACAATGGGCAGCGGTAGC ATTGCCGCCATGGCTCAGTTGGAGGCTGCCTACAAGGACAACATGACGTGCGAGGAGGCC AAGGAGCTGGTGACGTCGGCTATCCGCAAGGGCATCTTTAATGATCCCTACAGCGGTACT CAGGTAGACGTGTGCGTTATCACGAAGGCCAAGACGGAGCTCATGATCGGTTACGACACG CCGAACGAGCGCATGCACCCGCGGCAGGAAGTCATGCTCTCTCCTGGTACTACGCCGGTG CTCAAGGAGGAGATCCGTCACTTGGTTGATATAGTGGATGTCTGA
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  • Fasta :-

    MPGFDFENVQRNLNLESEGYSAPRTLKTGTTIVGVVYKDGVVLGADTRATEGSIVADKCC RKIHYMAPNIMCCGAGTSADTEAVTNMVSSHLALHRFETGKQSRVLEALTLLKRHLYRYQ GHVSAALVLGGVDVEGPFLATVAPHGSTDRLPFVTMGSGSIAAMAQLEAAYKDNMTCEEA KELVTSAIRKGIFNDPYSGTQVDVCVITKAKTELMIGYDTPNERMHPRQEVMLSPGTTPV LKEEIRHLVDIVDV

  • title: active site
  • coordinates: T30,D46,R48,K62,S158,D195,S198,G199
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Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India