LmxM.34.4020 | Serine peptidase, Clan SC, Family S09X

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:        

  • Computed_GO_Functions:        

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:  GO:0005783      

  • Curated_GO_Components:  endoplasmic reticulum      

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
LmxM.34.4020OTHER0.9945070.0049820.000512
No Results

  • Fasta :-

    >LmxM.34.4020 MSFGGFLLSAGLYLVLVAVFVSLFLHIMSYRYRSQQNRLLYYPQIPPESREVCEDPVALG IPYAERVCVTTADKVRLWGYMLWPAPAPSAEKSGNASVSDSIGHASSNLATAEGGVHVEV DASGGATESTSAGSTLPGSSRSVTMPSGMPTFVMLYFHGNAGNVGHRLPLARAFVTHLKC AVMMVDYRGFGLSDDSEQTQETLELDAQACFDYLWQDPRVPRDRIIVMGTSLGGAVSIHL AANERYARRIAAVIVENSFSSISDMASALSRPILTKLASQCPGLAVGIFEYYVKPLALRI SWNSAQKITKVVVPMLFLSGMRDEIVPPEQMRTLYKAATKCLRDGNGSDLTVPLRRFLEF EDGRHNNLPLMPGYMSALQDFVTDVRNAGSAAVV
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/626 Sequence name : 626 Sequence length : 394 VALUES OF COMPUTED PARAMETERS Coef20 : 4.320 CoefTot : -0.787 ChDiff : -2 ZoneTo : 47 KR : 3 DE : 0 CleavSite : 33 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.171 2.606 0.424 0.861 MesoH : 0.112 0.672 -0.203 0.273 MuHd_075 : 22.796 14.248 5.789 4.853 MuHd_095 : 22.708 16.710 5.268 5.276 MuHd_100 : 17.460 15.505 4.755 4.421 MuHd_105 : 16.008 14.290 4.427 3.756 Hmax_075 : 19.717 -1.750 -0.210 6.953 Hmax_095 : 9.887 9.188 0.099 3.824 Hmax_100 : 7.600 8.200 -0.806 2.600 Hmax_105 : 0.800 10.900 -0.186 7.740 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8826 0.1174 DFMC : 0.8790 0.1210
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 394 LmxM.34.4020 MSFGGFLLSAGLYLVLVAVFVSLFLHIMSYRYRSQQNRLLYYPQIPPESREVCEDPVALGIPYAERVCVTTADKVRLWGY 80 MLWPAPAPSAEKSGNASVSDSIGHASSNLATAEGGVHVEVDASGGATESTSAGSTLPGSSRSVTMPSGMPTFVMLYFHGN 160 AGNVGHRLPLARAFVTHLKCAVMMVDYRGFGLSDDSEQTQETLELDAQACFDYLWQDPRVPRDRIIVMGTSLGGAVSIHL 240 AANERYARRIAAVIVENSFSSISDMASALSRPILTKLASQCPGLAVGIFEYYVKPLALRISWNSAQKITKVVVPMLFLSG 320 MRDEIVPPEQMRTLYKAATKCLRDGNGSDLTVPLRRFLEFEDGRHNNLPLMPGYMSALQDFVTDVRNAGSAAVV 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 .......................................................................... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmxM.34.4020 31 LHIMSYR|YR 0.120 . LmxM.34.4020 33 IMSYRYR|SQ 0.133 . LmxM.34.4020 38 YRSQQNR|LL 0.100 . LmxM.34.4020 50 QIPPESR|EV 0.099 . LmxM.34.4020 66 GIPYAER|VC 0.066 . LmxM.34.4020 74 CVTTADK|VR 0.052 . LmxM.34.4020 76 TTADKVR|LW 0.122 . LmxM.34.4020 92 PAPSAEK|SG 0.069 . LmxM.34.4020 141 TLPGSSR|SV 0.163 . LmxM.34.4020 167 AGNVGHR|LP 0.069 . LmxM.34.4020 172 HRLPLAR|AF 0.114 . LmxM.34.4020 179 AFVTHLK|CA 0.062 . LmxM.34.4020 188 VMMVDYR|GF 0.108 . LmxM.34.4020 219 YLWQDPR|VP 0.074 . LmxM.34.4020 222 QDPRVPR|DR 0.354 . LmxM.34.4020 224 PRVPRDR|II 0.105 . LmxM.34.4020 245 HLAANER|YA 0.108 . LmxM.34.4020 248 ANERYAR|RI 0.253 . LmxM.34.4020 249 NERYARR|IA 0.161 . LmxM.34.4020 271 MASALSR|PI 0.133 . LmxM.34.4020 276 SRPILTK|LA 0.087 . LmxM.34.4020 294 IFEYYVK|PL 0.058 . LmxM.34.4020 299 VKPLALR|IS 0.069 . LmxM.34.4020 307 SWNSAQK|IT 0.074 . LmxM.34.4020 310 SAQKITK|VV 0.084 . LmxM.34.4020 322 LFLSGMR|DE 0.076 . LmxM.34.4020 332 VPPEQMR|TL 0.095 . LmxM.34.4020 336 QMRTLYK|AA 0.094 . LmxM.34.4020 340 LYKAATK|CL 0.069 . LmxM.34.4020 343 AATKCLR|DG 0.091 . LmxM.34.4020 355 DLTVPLR|RF 0.073 . LmxM.34.4020 356 LTVPLRR|FL 0.157 . LmxM.34.4020 364 LEFEDGR|HN 0.074 . LmxM.34.4020 386 DFVTDVR|NA 0.082 . ____________________________^_________________

  • Fasta :-

    >LmxM.34.4020 ATGAGCTTTGGCGGCTTTCTTCTCTCGGCCGGACTCTACTTGGTCCTGGTCGCTGTATTT GTGTCCCTCTTTCTGCACATCATGAGCTACCGCTACCGAAGTCAGCAGAACCGACTGCTC TACTACCCACAGATTCCTCCAGAGAGTCGAGAGGTCTGCGAAGACCCGGTGGCGCTCGGT ATCCCCTACGCAGAGCGTGTGTGCGTCACCACCGCTGATAAAGTGCGATTGTGGGGCTAC ATGCTGTGGCCGGCCCCTGCGCCGTCGGCGGAGAAGAGCGGCAATGCAAGCGTCTCCGAC TCGATCGGGCACGCATCCTCCAATTTAGCCACTGCAGAGGGAGGCGTGCATGTTGAGGTG GATGCATCAGGTGGCGCTACAGAGAGTACCAGCGCCGGCAGCACGTTGCCTGGCAGCAGT AGAAGCGTTACCATGCCGAGCGGGATGCCGACGTTTGTAATGCTGTACTTTCATGGAAAC GCCGGTAACGTTGGCCATCGCCTGCCTCTTGCTCGGGCCTTTGTGACCCACCTGAAGTGC GCGGTCATGATGGTTGACTATCGTGGTTTTGGCCTTAGCGATGACTCGGAGCAGACGCAG GAGACGTTGGAGCTGGATGCGCAGGCCTGCTTCGACTATCTGTGGCAGGATCCTCGTGTG CCGCGTGATCGTATCATTGTCATGGGCACCAGCCTCGGTGGCGCTGTCTCGATTCACTTG GCTGCCAACGAACGTTACGCCCGCCGCATAGCTGCTGTGATTGTAGAAAACTCCTTCAGC TCCATCAGCGACATGGCCTCGGCCCTGAGCCGGCCAATCCTGACGAAGCTGGCGAGTCAA TGCCCAGGCCTTGCGGTCGGTATCTTTGAGTACTACGTCAAGCCCCTGGCTCTGCGGATA AGTTGGAACAGCGCGCAGAAGATTACGAAGGTTGTGGTGCCGATGCTCTTCCTCTCTGGT ATGCGTGATGAGATAGTGCCACCGGAGCAGATGCGGACACTATACAAGGCTGCGACGAAG TGTCTGCGCGATGGCAACGGCAGCGACCTCACTGTCCCGCTGCGTCGCTTTCTCGAGTTT GAGGACGGGCGGCACAACAACCTGCCGCTCATGCCCGGCTACATGAGCGCCCTGCAGGAC TTTGTCACGGACGTGCGCAATGCCGGGTCCGCTGCTGTCGTTTGA
  • Download Fasta

  • Fasta :-

    MSFGGFLLSAGLYLVLVAVFVSLFLHIMSYRYRSQQNRLLYYPQIPPESREVCEDPVALG IPYAERVCVTTADKVRLWGYMLWPAPAPSAEKSGNASVSDSIGHASSNLATAEGGVHVEV DASGGATESTSAGSTLPGSSRSVTMPSGMPTFVMLYFHGNAGNVGHRLPLARAFVTHLKC AVMMVDYRGFGLSDDSEQTQETLELDAQACFDYLWQDPRVPRDRIIVMGTSLGGAVSIHL AANERYARRIAAVIVENSFSSISDMASALSRPILTKLASQCPGLAVGIFEYYVKPLALRI SWNSAQKITKVVVPMLFLSGMRDEIVPPEQMRTLYKAATKCLRDGNGSDLTVPLRRFLEF EDGRHNNLPLMPGYMSALQDFVTDVRNAGSAAVV

    No Results
No Results
No Results
IDSitePeptideScoreMethod
LmxM.34.402097 SSGNASVSDS0.996unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India