LmxM.36.0200 | serine peptidase clan SF, family S26B, putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:        

  • Computed_GO_Functions:        

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:  GO:0020023      GO:0005739      

  • Curated_GO_Components:  kinetoplast      mitochondrion      

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
LmxM.36.0200SP0.3784620.6101180.011421CS pos: 35-36. VSC-AV. Pr: 0.5455
No Results

  • Fasta :-

    >LmxM.36.0200 MPWRQWWSTLRCSKYGDVPFMLLGVFIGWNCDVSCAVKGVSMVPTLHPGEYILFVPYTML RVRRWFNAPLVNLSDVVVVKVSDDLSVCKRVVKCTSSRAQAEEWGKDHYVEVVPAPYSSP AAQHINGHAEDSTEMDSVTNSERAYFDYVARNTVRSKDWDSCTDRIPNPSQWVWLEGDNK TDSFDSRRCGPVPVECVRGLVLASIWPSPHTLQRPPPPPRASQLP
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/61 Sequence name : 61 Sequence length : 225 VALUES OF COMPUTED PARAMETERS Coef20 : 4.040 CoefTot : -2.477 ChDiff : 0 ZoneTo : 74 KR : 7 DE : 3 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.224 1.571 0.227 0.604 MesoH : -0.064 0.793 -0.201 0.318 MuHd_075 : 19.156 15.668 7.909 5.377 MuHd_095 : 27.787 19.769 6.847 5.819 MuHd_100 : 33.376 18.739 7.843 6.691 MuHd_105 : 39.341 22.721 9.773 7.829 Hmax_075 : 9.683 17.100 5.131 3.526 Hmax_095 : 16.100 14.600 2.094 5.380 Hmax_100 : 15.900 15.600 2.507 5.650 Hmax_105 : 20.183 19.483 2.634 7.292 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9600 0.0400 DFMC : 0.9364 0.0636
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 225 LmxM.36.0200 MPWRQWWSTLRCSKYGDVPFMLLGVFIGWNCDVSCAVKGVSMVPTLHPGEYILFVPYTMLRVRRWFNAPLVNLSDVVVVK 80 VSDDLSVCKRVVKCTSSRAQAEEWGKDHYVEVVPAPYSSPAAQHINGHAEDSTEMDSVTNSERAYFDYVARNTVRSKDWD 160 SCTDRIPNPSQWVWLEGDNKTDSFDSRRCGPVPVECVRGLVLASIWPSPHTLQRPPPPPRASQLP 240 ................................................................................ 80 ................................................................................ 160 ................................................................. 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmxM.36.0200 4 ---MPWR|QW 0.102 . LmxM.36.0200 11 QWWSTLR|CS 0.080 . LmxM.36.0200 14 STLRCSK|YG 0.117 . LmxM.36.0200 38 DVSCAVK|GV 0.091 . LmxM.36.0200 61 VPYTMLR|VR 0.067 . LmxM.36.0200 63 YTMLRVR|RW 0.078 . LmxM.36.0200 64 TMLRVRR|WF 0.448 . LmxM.36.0200 80 SDVVVVK|VS 0.065 . LmxM.36.0200 89 DDLSVCK|RV 0.067 . LmxM.36.0200 90 DLSVCKR|VV 0.212 . LmxM.36.0200 93 VCKRVVK|CT 0.121 . LmxM.36.0200 98 VKCTSSR|AQ 0.080 . LmxM.36.0200 106 QAEEWGK|DH 0.064 . LmxM.36.0200 143 SVTNSER|AY 0.091 . LmxM.36.0200 151 YFDYVAR|NT 0.083 . LmxM.36.0200 155 VARNTVR|SK 0.118 . LmxM.36.0200 157 RNTVRSK|DW 0.084 . LmxM.36.0200 165 WDSCTDR|IP 0.100 . LmxM.36.0200 180 WLEGDNK|TD 0.055 . LmxM.36.0200 187 TDSFDSR|RC 0.143 . LmxM.36.0200 188 DSFDSRR|CG 0.099 . LmxM.36.0200 198 VPVECVR|GL 0.077 . LmxM.36.0200 214 SPHTLQR|PP 0.097 . LmxM.36.0200 220 RPPPPPR|AS 0.081 . ____________________________^_________________

  • Fasta :-

    >LmxM.36.0200 ATGCCGTGGCGGCAATGGTGGTCAACGCTTCGCTGCTCCAAGTACGGAGACGTCCCTTTT ATGCTTCTCGGCGTGTTCATCGGCTGGAACTGTGATGTGAGCTGTGCTGTGAAGGGGGTA TCCATGGTGCCCACCTTACACCCCGGTGAGTACATCCTCTTTGTCCCTTACACAATGCTT CGGGTCCGCCGCTGGTTCAATGCCCCTTTGGTAAACTTGAGTGATGTGGTGGTTGTCAAG GTGTCCGACGACCTTTCAGTTTGCAAGAGAGTTGTCAAGTGCACCTCTAGCAGAGCACAA GCTGAGGAATGGGGCAAGGATCACTACGTGGAAGTGGTGCCTGCGCCGTACAGCTCGCCG GCTGCACAGCACATAAATGGCCACGCCGAGGACTCCACAGAGATGGACAGTGTGACGAAC TCTGAGCGGGCCTACTTCGACTACGTTGCCCGTAACACCGTCCGCTCCAAAGACTGGGAC TCGTGCACTGATCGCATCCCCAACCCCTCTCAGTGGGTCTGGCTGGAGGGCGACAACAAA ACCGACAGCTTTGACTCTCGCCGTTGTGGACCTGTGCCGGTCGAGTGCGTTCGTGGACTC GTTCTTGCATCCATCTGGCCCTCTCCTCACACCCTTCAGCGACCCCCGCCGCCACCGCGC GCATCGCAGCTTCCCTGA
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  • Fasta :-

    MPWRQWWSTLRCSKYGDVPFMLLGVFIGWNCDVSCAVKGVSMVPTLHPGEYILFVPYTML RVRRWFNAPLVNLSDVVVVKVSDDLSVCKRVVKCTSSRAQAEEWGKDHYVEVVPAPYSSP AAQHINGHAEDSTEMDSVTNSERAYFDYVARNTVRSKDWDSCTDRIPNPSQWVWLEGDNK TDSFDSRRCGPVPVECVRGLVLASIWPSPHTLQRPPPPPRASQLP

    No Results
No Results
No Results
IDSitePeptideScoreMethod
LmxM.36.0200186 SDSFDSRRCG0.994unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India