LmxM.36.0320 | proteasome subunit beta type-2, putative

_IDPredictionOTHERSPmTPCS_Position
LmxM.36.0320OTHER0.9947940.0050870.000119
No Results

  • Fasta :-

    >LmxM.36.0320 MAETAIAFRCKDYVMVAAAGLNAFYYIKITDAEDKITQLDTHQLVACTGENGPRVNFTEY VKCNLMLNRMRQHGRHSSCDSTANFMRNCLASAIRSREGAYQVSCLFAGYDMPVSEDDDG AVGPQLFYLDYLGTLQAVPYGCHGYGACFVTALLDCLWRPDLTQQEGLELMQKCCDEVKR RVVISNAFFFVKAVTKNGVEVITTVH
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/313 Sequence name : 313 Sequence length : 206 VALUES OF COMPUTED PARAMETERS Coef20 : 4.352 CoefTot : 0.141 ChDiff : -4 ZoneTo : 2 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.253 1.294 0.264 0.553 MesoH : -0.375 0.333 -0.210 0.255 MuHd_075 : 16.571 12.266 5.233 2.517 MuHd_095 : 5.957 8.781 4.550 1.976 MuHd_100 : 6.184 4.144 3.148 1.096 MuHd_105 : 15.039 3.861 3.124 1.753 Hmax_075 : 18.783 19.600 4.710 5.472 Hmax_095 : 6.700 13.038 1.858 3.964 Hmax_100 : 6.700 13.100 1.857 3.910 Hmax_105 : 7.612 10.000 1.204 3.550 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9420 0.0580 DFMC : 0.9387 0.0613
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 206 LmxM.36.0320 MAETAIAFRCKDYVMVAAAGLNAFYYIKITDAEDKITQLDTHQLVACTGENGPRVNFTEYVKCNLMLNRMRQHGRHSSCD 80 STANFMRNCLASAIRSREGAYQVSCLFAGYDMPVSEDDDGAVGPQLFYLDYLGTLQAVPYGCHGYGACFVTALLDCLWRP 160 DLTQQEGLELMQKCCDEVKRRVVISNAFFFVKAVTKNGVEVITTVH 240 ................................................................................ 80 ................................................................................ 160 .............................................. 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmxM.36.0320 9 ETAIAFR|CK 0.096 . LmxM.36.0320 11 AIAFRCK|DY 0.078 . LmxM.36.0320 28 NAFYYIK|IT 0.067 . LmxM.36.0320 35 ITDAEDK|IT 0.062 . LmxM.36.0320 54 TGENGPR|VN 0.080 . LmxM.36.0320 62 NFTEYVK|CN 0.053 . LmxM.36.0320 69 CNLMLNR|MR 0.100 . LmxM.36.0320 71 LMLNRMR|QH 0.084 . LmxM.36.0320 75 RMRQHGR|HS 0.118 . LmxM.36.0320 87 STANFMR|NC 0.098 . LmxM.36.0320 95 CLASAIR|SR 0.127 . LmxM.36.0320 97 ASAIRSR|EG 0.089 . LmxM.36.0320 159 LLDCLWR|PD 0.080 . LmxM.36.0320 173 GLELMQK|CC 0.065 . LmxM.36.0320 179 KCCDEVK|RR 0.056 . LmxM.36.0320 180 CCDEVKR|RV 0.197 . LmxM.36.0320 181 CDEVKRR|VV 0.195 . LmxM.36.0320 192 NAFFFVK|AV 0.093 . LmxM.36.0320 196 FVKAVTK|NG 0.062 . ____________________________^_________________

  • Fasta :-

    >LmxM.36.0320 ATGGCGGAGACTGCGATAGCGTTCCGCTGCAAGGACTACGTCATGGTCGCTGCGGCAGGC CTCAACGCCTTCTACTACATTAAGATAACCGACGCGGAGGACAAGATTACACAGCTTGAC ACGCATCAGTTGGTGGCGTGCACTGGCGAGAACGGCCCTCGCGTGAACTTCACCGAATAC GTCAAGTGCAACCTCATGCTCAACCGCATGCGTCAGCACGGACGCCACAGCAGCTGTGAT TCGACGGCGAACTTCATGCGCAACTGCCTCGCCAGTGCGATCCGCAGTCGCGAGGGGGCT TACCAGGTGAGCTGCCTCTTTGCCGGCTACGACATGCCGGTTTCCGAGGATGACGACGGC GCGGTGGGGCCGCAGTTGTTTTACTTGGACTACCTCGGCACCCTGCAGGCTGTACCGTAT GGTTGCCACGGCTACGGCGCTTGCTTTGTGACTGCTCTGCTAGATTGCCTATGGCGTCCT GACTTGACCCAACAAGAGGGCCTCGAACTCATGCAGAAGTGCTGCGATGAGGTGAAGCGC CGTGTCGTCATCAGCAACGCATTCTTCTTCGTGAAGGCGGTGACGAAGAACGGCGTAGAG GTCATCACGACGGTGCACTAG
  • Download Fasta

  • Fasta :-

    MAETAIAFRCKDYVMVAAAGLNAFYYIKITDAEDKITQLDTHQLVACTGENGPRVNFTEY VKCNLMLNRMRQHGRHSSCDSTANFMRNCLASAIRSREGAYQVSCLFAGYDMPVSEDDDG AVGPQLFYLDYLGTLQAVPYGCHGYGACFVTALLDCLWRPDLTQQEGLELMQKCCDEVKR RVVISNAFFFVKAVTKNGVEVITTVH

    No Results
No Results
No Results
IDSitePeptideScoreMethod
LmxM.36.032077 SHGRHSSCDS0.997unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India