LmxM.36.1600 | proteasome subunit alpha type-1, putative

_IDPredictionOTHERSPmTPCS_Position
LmxM.36.1600OTHER0.9998790.0000420.000079
No Results

  • Fasta :-

    >LmxM.36.1600 MFKNEYDSDITTWSPTGRLFQIEYANEAVNNGSATVGVKGRDYVVLTALKRSPVAELSSY QEKVFEIDEHVGMSISGLVADGRVLARFLRTECMNYRYMYSDGMPMNQMADMVGEKHQRH IQFGGKRPFGVGLLLAGYDRQGPHLYQTVPSGDVYDYKATAMGVRSQASRTYLEKHFVHF TDCTLDELVVHALKALASATSEGVELNVKNTTIAIVGKDTPFTIFEEESARRYLDEFKMR PEDRVAAADDEEEVLHEQPLDVEE
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/722 Sequence name : 722 Sequence length : 264 VALUES OF COMPUTED PARAMETERS Coef20 : 3.727 CoefTot : -0.247 ChDiff : -14 ZoneTo : 4 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.353 1.053 -0.115 0.440 MesoH : -0.889 0.107 -0.483 0.126 MuHd_075 : 30.200 14.818 7.934 5.959 MuHd_095 : 17.818 9.039 2.981 5.066 MuHd_100 : 18.566 9.173 3.486 5.440 MuHd_105 : 9.862 5.946 1.918 3.935 Hmax_075 : 1.575 -0.817 -1.938 1.902 Hmax_095 : 2.600 -0.350 -2.671 2.756 Hmax_100 : 1.000 0.500 -2.089 3.200 Hmax_105 : -2.217 -3.000 -3.744 1.633 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8879 0.1121 DFMC : 0.9146 0.0854
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 264 LmxM.36.1600 MFKNEYDSDITTWSPTGRLFQIEYANEAVNNGSATVGVKGRDYVVLTALKRSPVAELSSYQEKVFEIDEHVGMSISGLVA 80 DGRVLARFLRTECMNYRYMYSDGMPMNQMADMVGEKHQRHIQFGGKRPFGVGLLLAGYDRQGPHLYQTVPSGDVYDYKAT 160 AMGVRSQASRTYLEKHFVHFTDCTLDELVVHALKALASATSEGVELNVKNTTIAIVGKDTPFTIFEEESARRYLDEFKMR 240 PEDRVAAADDEEEVLHEQPLDVEE 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ........................ 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmxM.36.1600 3 ----MFK|NE 0.062 . LmxM.36.1600 18 TWSPTGR|LF 0.114 . LmxM.36.1600 39 SATVGVK|GR 0.065 . LmxM.36.1600 41 TVGVKGR|DY 0.119 . LmxM.36.1600 50 VVLTALK|RS 0.053 . LmxM.36.1600 51 VLTALKR|SP 0.183 . LmxM.36.1600 63 LSSYQEK|VF 0.084 . LmxM.36.1600 83 GLVADGR|VL 0.095 . LmxM.36.1600 87 DGRVLAR|FL 0.122 . LmxM.36.1600 90 VLARFLR|TE 0.197 . LmxM.36.1600 97 TECMNYR|YM 0.091 . LmxM.36.1600 116 ADMVGEK|HQ 0.068 . LmxM.36.1600 119 VGEKHQR|HI 0.102 . LmxM.36.1600 126 HIQFGGK|RP 0.062 . LmxM.36.1600 127 IQFGGKR|PF 0.195 . LmxM.36.1600 140 LLAGYDR|QG 0.075 . LmxM.36.1600 158 GDVYDYK|AT 0.080 . LmxM.36.1600 165 ATAMGVR|SQ 0.090 . LmxM.36.1600 170 VRSQASR|TY 0.112 . LmxM.36.1600 175 SRTYLEK|HF 0.066 . LmxM.36.1600 194 LVVHALK|AL 0.059 . LmxM.36.1600 209 GVELNVK|NT 0.060 . LmxM.36.1600 218 TIAIVGK|DT 0.081 . LmxM.36.1600 231 FEEESAR|RY 0.087 . LmxM.36.1600 232 EEESARR|YL 0.129 . LmxM.36.1600 238 RYLDEFK|MR 0.055 . LmxM.36.1600 240 LDEFKMR|PE 0.101 . LmxM.36.1600 244 KMRPEDR|VA 0.104 . ____________________________^_________________

  • Fasta :-

    >LmxM.36.1600 ATGTTCAAGAACGAGTATGATAGCGACATCACGACCTGGAGCCCGACGGGTCGGCTCTTT CAGATCGAGTATGCGAACGAGGCTGTCAACAACGGCTCCGCGACGGTCGGCGTGAAAGGG AGGGACTATGTTGTGCTTACCGCACTCAAGCGCAGCCCCGTCGCGGAGCTGTCCTCGTAC CAAGAAAAGGTCTTCGAAATTGACGAGCATGTTGGCATGTCCATCTCGGGCCTAGTGGCG GACGGCCGCGTGCTTGCTCGCTTCCTGCGCACAGAATGCATGAACTATCGCTACATGTAT AGCGATGGTATGCCAATGAATCAAATGGCGGACATGGTCGGGGAGAAGCACCAGCGCCAC ATCCAATTCGGCGGGAAGCGTCCTTTCGGCGTTGGCTTGCTGCTTGCTGGCTACGACCGT CAGGGGCCGCACCTGTACCAGACGGTGCCGTCCGGTGACGTCTACGACTACAAGGCCACG GCGATGGGCGTGCGGTCGCAGGCCTCCCGCACGTATTTGGAGAAGCATTTCGTGCACTTC ACCGACTGCACTCTCGATGAGCTCGTGGTGCACGCATTGAAGGCCCTCGCTTCCGCCACA TCGGAGGGCGTGGAACTGAATGTAAAAAACACCACCATCGCCATCGTAGGCAAGGATACC CCCTTCACTATCTTTGAGGAGGAGAGCGCGCGCAGGTACCTGGATGAGTTCAAGATGCGT CCAGAAGACCGCGTGGCGGCGGCGGATGATGAGGAGGAGGTGCTGCACGAGCAGCCTCTG GACGTCGAGGAATAG
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  • Fasta :-

    MFKNEYDSDITTWSPTGRLFQIEYANEAVNNGSATVGVKGRDYVVLTALKRSPVAELSSY QEKVFEIDEHVGMSISGLVADGRVLARFLRTECMNYRYMYSDGMPMNQMADMVGEKHQRH IQFGGKRPFGVGLLLAGYDRQGPHLYQTVPSGDVYDYKATAMGVRSQASRTYLEKHFVHF TDCTLDELVVHALKALASATSEGVELNVKNTTIAIVGKDTPFTIFEEESARRYLDEFKMR PEDRVAAADDEEEVLHEQPLDVEE

  • title: active site
  • coordinates: S33,L49,R51,K63,V164
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Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India