LmxM.36.1690 | Peptidase M76 family, putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0004222      

  • Computed_GO_Functions:  metalloendopeptidase activity      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:  GO:0005737      

  • Curated_GO_Components:  cytoplasm      

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
LmxM.36.1690OTHER0.9999320.0000660.000002
No Results

  • Fasta :-

    >LmxM.36.1690 MGSLSSSSSSSVATDAGPAAAQTDAQKVTRVDSLYSPHDVCEAAVDYVLRHVNTVQYMIQ SIEEITGKPFLRDRIKCLPVVPRGEASCNPAIGLTPDRVFAGYMWRSARSDCQAKDVVLL EDHITRLFNTKHAAAFLRKDKGVNERAASSATTSDATAAAASSPSATTTPSQLQRLLAGS QLPVLEQVERNIRHELVHAFDDARGVIESSDCVHQACSEIRAARLSGDCFVGQEMRKGRF NFFEGGQKCVRRRAVMAVDRNPVCRGFSERAVDTVFQKCYSDYEPFAAPIYALGSYGDSQ FANGTLKL
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/227 Sequence name : 227 Sequence length : 308 VALUES OF COMPUTED PARAMETERS Coef20 : 4.236 CoefTot : 0.909 ChDiff : 1 ZoneTo : 14 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.794 0.535 -0.059 0.404 MesoH : -1.025 0.042 -0.463 0.078 MuHd_075 : 10.373 6.277 3.047 2.686 MuHd_095 : 12.974 13.804 3.152 3.277 MuHd_100 : 8.135 8.931 2.451 2.075 MuHd_105 : 7.101 2.644 2.225 0.499 Hmax_075 : 9.975 6.200 1.082 3.060 Hmax_095 : 12.200 9.713 1.450 3.132 Hmax_100 : 11.400 7.700 1.313 3.100 Hmax_105 : 9.400 6.767 1.373 2.870 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.6950 0.3050 DFMC : 0.5356 0.4644
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 308 LmxM.36.1690 MGSLSSSSSSSVATDAGPAAAQTDAQKVTRVDSLYSPHDVCEAAVDYVLRHVNTVQYMIQSIEEITGKPFLRDRIKCLPV 80 VPRGEASCNPAIGLTPDRVFAGYMWRSARSDCQAKDVVLLEDHITRLFNTKHAAAFLRKDKGVNERAASSATTSDATAAA 160 ASSPSATTTPSQLQRLLAGSQLPVLEQVERNIRHELVHAFDDARGVIESSDCVHQACSEIRAARLSGDCFVGQEMRKGRF 240 NFFEGGQKCVRRRAVMAVDRNPVCRGFSERAVDTVFQKCYSDYEPFAAPIYALGSYGDSQFANGTLKL 320 ................................................................................ 80 ............................P................................................... 160 ................................................................................ 240 .................................................................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ LmxM.36.1690 27 AQTDAQK|VT 0.056 . LmxM.36.1690 30 DAQKVTR|VD 0.088 . LmxM.36.1690 50 AVDYVLR|HV 0.151 . LmxM.36.1690 68 IEEITGK|PF 0.058 . LmxM.36.1690 72 TGKPFLR|DR 0.137 . LmxM.36.1690 74 KPFLRDR|IK 0.070 . LmxM.36.1690 76 FLRDRIK|CL 0.074 . LmxM.36.1690 83 CLPVVPR|GE 0.092 . LmxM.36.1690 98 IGLTPDR|VF 0.071 . LmxM.36.1690 106 FAGYMWR|SA 0.130 . LmxM.36.1690 109 YMWRSAR|SD 0.596 *ProP* LmxM.36.1690 115 RSDCQAK|DV 0.101 . LmxM.36.1690 126 LEDHITR|LF 0.079 . LmxM.36.1690 131 TRLFNTK|HA 0.080 . LmxM.36.1690 138 HAAAFLR|KD 0.100 . LmxM.36.1690 139 AAAFLRK|DK 0.144 . LmxM.36.1690 141 AFLRKDK|GV 0.165 . LmxM.36.1690 146 DKGVNER|AA 0.132 . LmxM.36.1690 175 TPSQLQR|LL 0.123 . LmxM.36.1690 190 VLEQVER|NI 0.098 . LmxM.36.1690 193 QVERNIR|HE 0.120 . LmxM.36.1690 204 HAFDDAR|GV 0.132 . LmxM.36.1690 221 QACSEIR|AA 0.119 . LmxM.36.1690 224 SEIRAAR|LS 0.403 . LmxM.36.1690 236 FVGQEMR|KG 0.071 . LmxM.36.1690 237 VGQEMRK|GR 0.079 . LmxM.36.1690 239 QEMRKGR|FN 0.451 . LmxM.36.1690 248 FFEGGQK|CV 0.060 . LmxM.36.1690 251 GGQKCVR|RR 0.067 . LmxM.36.1690 252 GQKCVRR|RA 0.172 . LmxM.36.1690 253 QKCVRRR|AV 0.366 . LmxM.36.1690 260 AVMAVDR|NP 0.072 . LmxM.36.1690 265 DRNPVCR|GF 0.143 . LmxM.36.1690 270 CRGFSER|AV 0.282 . LmxM.36.1690 278 VDTVFQK|CY 0.075 . LmxM.36.1690 307 FANGTLK|L- 0.062 . ____________________________^_________________

  • Fasta :-

    >LmxM.36.1690 ATGGGTTCGCTCTCCTCGTCCTCGTCCTCCTCCGTGGCAACTGATGCTGGTCCAGCGGCG GCGCAAACAGACGCACAGAAGGTGACGCGTGTCGACTCGCTCTACAGCCCGCACGATGTC TGCGAGGCCGCCGTAGACTACGTTCTGCGCCACGTGAACACGGTTCAGTACATGATTCAG AGTATTGAAGAGATCACCGGCAAGCCCTTCCTGCGCGACCGCATCAAGTGCCTACCCGTT GTCCCACGTGGTGAGGCCTCTTGTAACCCCGCGATAGGACTTACCCCAGATCGAGTGTTT GCGGGGTATATGTGGCGCAGTGCTCGCTCCGACTGCCAGGCCAAAGATGTCGTGCTACTG GAGGATCACATTACTCGTCTTTTCAACACAAAGCACGCAGCGGCATTCTTAAGGAAGGAC AAGGGGGTCAACGAGCGCGCGGCCTCGTCAGCGACGACATCGGATGCCACTGCGGCGGCG GCATCTTCGCCATCCGCAACCACCACGCCATCACAGCTGCAGCGCCTCCTCGCTGGATCG CAGCTGCCGGTGCTGGAGCAGGTGGAGCGCAACATACGCCATGAGCTTGTCCATGCCTTC GATGATGCTCGAGGTGTGATTGAAAGCTCCGACTGCGTGCATCAGGCCTGCAGCGAGATT CGCGCGGCACGTCTTAGCGGTGACTGTTTTGTCGGCCAAGAGATGCGGAAGGGGCGCTTC AACTTCTTCGAGGGTGGGCAGAAGTGCGTTCGCCGCCGTGCCGTCATGGCGGTCGATCGC AATCCAGTGTGTCGCGGCTTCTCTGAGCGCGCGGTGGACACGGTGTTTCAGAAGTGCTAC TCCGACTACGAGCCCTTCGCAGCACCCATCTATGCACTTGGGAGCTACGGCGACAGTCAG TTCGCAAATGGCACGCTGAAGCTGTGA
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  • Fasta :-

    MGSLSSSSSSSVATDAGPAAAQTDAQKVTRVDSLYSPHDVCEAAVDYVLRHVNTVQYMIQ SIEEITGKPFLRDRIKCLPVVPRGEASCNPAIGLTPDRVFAGYMWRSARSDCQAKDVVLL EDHITRLFNTKHAAAFLRKDKGVNERAASSATTSDATAAAASSPSATTTPSQLQRLLAGS QLPVLEQVERNIRHELVHAFDDARGVIESSDCVHQACSEIRAARLSGDCFVGQEMRKGRF NFFEGGQKCVRRRAVMAVDRNPVCRGFSERAVDTVFQKCYSDYEPFAAPIYALGSYGDSQ FANGTLKL

    No Results
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IDSitePeptideScoreMethod
LmxM.36.169010 SSSSSSSVAT0.992unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India