LmxM.36.4360 | Regulatory particle triple-A ATPase subunit 6

_IDPredictionOTHERSPmTPCS_Position
LmxM.36.4360OTHER0.9999550.0000120.000033
No Results

  • Fasta :-

    >LmxM.36.4360 MLADVAVPPSSSTAPGSNTAVSDYFLQKIHELRATQKRTLDNFERLEAQRNDLNRRVRHL KEEVQMLQESGSLVVDVVRVMGKNKVLVKAGSGQGKMVVDVDKSVDFKDLTPNARVALRS GTSAIHYILPTKVDPLVSLMKVEKAGKESTYDEIGGLSRQVKEIKEVIELPVKHPKLFEA LGIEQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGAELVQKYIGEGARMVRELFVM AREHSPSIIFMDEIDSIGSSRLESGENGDSEVQRTMLELLNQLDGFEASKNIKVIMATNR MDILDEALLRPGRIDRKIEFPAPDEAARFEILKIHSRKMNLTRGIDLKDIAKKTSNCSGA ELKAVCTEAGMFALRERRVHITHEDFVLAVAKVMHKDQDKNVSLKKMWK
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/825 Sequence name : 825 Sequence length : 409 VALUES OF COMPUTED PARAMETERS Coef20 : 3.846 CoefTot : -0.135 ChDiff : 6 ZoneTo : 22 KR : 0 DE : 1 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.765 1.082 -0.051 0.414 MesoH : -0.848 0.247 -0.427 0.163 MuHd_075 : 20.566 15.347 5.961 3.921 MuHd_095 : 14.273 10.809 3.579 2.428 MuHd_100 : 17.626 11.303 4.887 2.845 MuHd_105 : 17.802 9.739 4.728 2.785 Hmax_075 : 11.550 10.000 1.898 3.860 Hmax_095 : 11.375 7.438 1.298 3.334 Hmax_100 : 10.000 7.300 1.201 3.190 Hmax_105 : 9.800 2.917 1.201 2.710 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9735 0.0265 DFMC : 0.9425 0.0575
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 409 LmxM.36.4360 MLADVAVPPSSSTAPGSNTAVSDYFLQKIHELRATQKRTLDNFERLEAQRNDLNRRVRHLKEEVQMLQESGSLVVDVVRV 80 MGKNKVLVKAGSGQGKMVVDVDKSVDFKDLTPNARVALRSGTSAIHYILPTKVDPLVSLMKVEKAGKESTYDEIGGLSRQ 160 VKEIKEVIELPVKHPKLFEALGIEQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGAELVQKYIGEGARMVRELFVM 240 AREHSPSIIFMDEIDSIGSSRLESGENGDSEVQRTMLELLNQLDGFEASKNIKVIMATNRMDILDEALLRPGRIDRKIEF 320 PAPDEAARFEILKIHSRKMNLTRGIDLKDIAKKTSNCSGAELKAVCTEAGMFALRERRVHITHEDFVLAVAKVMHKDQDK 400 NVSLKKMWK 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ......... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmxM.36.4360 28 SDYFLQK|IH 0.064 . LmxM.36.4360 33 QKIHELR|AT 0.092 . LmxM.36.4360 37 ELRATQK|RT 0.066 . LmxM.36.4360 38 LRATQKR|TL 0.359 . LmxM.36.4360 45 TLDNFER|LE 0.075 . LmxM.36.4360 50 ERLEAQR|ND 0.067 . LmxM.36.4360 55 QRNDLNR|RV 0.145 . LmxM.36.4360 56 RNDLNRR|VR 0.109 . LmxM.36.4360 58 DLNRRVR|HL 0.347 . LmxM.36.4360 61 RRVRHLK|EE 0.157 . LmxM.36.4360 79 LVVDVVR|VM 0.085 . LmxM.36.4360 83 VVRVMGK|NK 0.059 . LmxM.36.4360 85 RVMGKNK|VL 0.070 . LmxM.36.4360 89 KNKVLVK|AG 0.081 . LmxM.36.4360 96 AGSGQGK|MV 0.118 . LmxM.36.4360 103 MVVDVDK|SV 0.114 . LmxM.36.4360 108 DKSVDFK|DL 0.096 . LmxM.36.4360 115 DLTPNAR|VA 0.090 . LmxM.36.4360 119 NARVALR|SG 0.135 . LmxM.36.4360 132 HYILPTK|VD 0.055 . LmxM.36.4360 141 PLVSLMK|VE 0.059 . LmxM.36.4360 144 SLMKVEK|AG 0.066 . LmxM.36.4360 147 KVEKAGK|ES 0.060 . LmxM.36.4360 159 EIGGLSR|QV 0.103 . LmxM.36.4360 162 GLSRQVK|EI 0.253 . LmxM.36.4360 165 RQVKEIK|EV 0.075 . LmxM.36.4360 173 VIELPVK|HP 0.053 . LmxM.36.4360 176 LPVKHPK|LF 0.077 . LmxM.36.4360 187 LGIEQPK|GV 0.077 . LmxM.36.4360 199 GPPGTGK|TL 0.059 . LmxM.36.4360 204 GKTLLAR|AV 0.134 . LmxM.36.4360 216 TDCTFIR|VS 0.150 . LmxM.36.4360 225 GAELVQK|YI 0.105 . LmxM.36.4360 232 YIGEGAR|MV 0.141 . LmxM.36.4360 235 EGARMVR|EL 0.208 . LmxM.36.4360 242 ELFVMAR|EH 0.105 . LmxM.36.4360 261 DSIGSSR|LE 0.091 . LmxM.36.4360 274 GDSEVQR|TM 0.128 . LmxM.36.4360 290 DGFEASK|NI 0.062 . LmxM.36.4360 293 EASKNIK|VI 0.073 . LmxM.36.4360 300 VIMATNR|MD 0.083 . LmxM.36.4360 310 LDEALLR|PG 0.075 . LmxM.36.4360 313 ALLRPGR|ID 0.208 . LmxM.36.4360 316 RPGRIDR|KI 0.282 . LmxM.36.4360 317 PGRIDRK|IE 0.078 . LmxM.36.4360 328 APDEAAR|FE 0.099 . LmxM.36.4360 333 ARFEILK|IH 0.068 . LmxM.36.4360 337 ILKIHSR|KM 0.074 . LmxM.36.4360 338 LKIHSRK|MN 0.097 . LmxM.36.4360 343 RKMNLTR|GI 0.123 . LmxM.36.4360 348 TRGIDLK|DI 0.096 . LmxM.36.4360 352 DLKDIAK|KT 0.064 . LmxM.36.4360 353 LKDIAKK|TS 0.100 . LmxM.36.4360 363 CSGAELK|AV 0.097 . LmxM.36.4360 375 AGMFALR|ER 0.084 . LmxM.36.4360 377 MFALRER|RV 0.119 . LmxM.36.4360 378 FALRERR|VH 0.322 . LmxM.36.4360 392 FVLAVAK|VM 0.061 . LmxM.36.4360 396 VAKVMHK|DQ 0.072 . LmxM.36.4360 400 MHKDQDK|NV 0.082 . LmxM.36.4360 405 DKNVSLK|KM 0.072 . LmxM.36.4360 406 KNVSLKK|MW 0.111 . LmxM.36.4360 409 SLKKMWK|-- 0.069 . ____________________________^_________________

  • Fasta :-

    >LmxM.36.4360 ATGCTCGCTGACGTTGCCGTGCCGCCATCCTCGTCAACGGCGCCGGGGAGCAACACGGCC GTTTCTGACTACTTTCTTCAGAAGATCCACGAACTTCGCGCAACGCAGAAGCGCACCCTC GACAATTTTGAGCGACTCGAAGCCCAGCGCAATGACCTTAACCGCCGTGTCCGCCACCTC AAGGAGGAGGTGCAGATGCTTCAGGAATCCGGCTCCCTGGTCGTGGACGTTGTCAGAGTA ATGGGCAAGAACAAGGTGCTGGTGAAGGCTGGTTCTGGTCAGGGAAAGATGGTGGTGGAT GTGGACAAGTCGGTGGACTTCAAGGACTTGACCCCCAACGCCCGCGTTGCCCTGCGCAGC GGCACCTCGGCAATCCACTACATTCTGCCCACGAAGGTCGACCCGCTCGTGTCGCTCATG AAGGTTGAGAAGGCTGGCAAGGAGTCAACCTATGACGAGATCGGCGGCCTGTCGCGCCAG GTGAAGGAGATCAAGGAAGTGATCGAGCTCCCCGTAAAGCACCCAAAGCTGTTTGAGGCT CTTGGTATTGAGCAGCCGAAGGGTGTGCTTCTGTATGGCCCGCCTGGCACCGGTAAGACC CTGCTTGCGCGTGCGGTGGCACACCACACCGACTGCACCTTTATCCGTGTCAGTGGTGCG GAGCTGGTGCAGAAGTACATCGGCGAGGGTGCCCGCATGGTGCGTGAGTTGTTTGTTATG GCGCGCGAGCACAGCCCCTCAATCATTTTCATGGATGAAATCGACTCCATCGGCTCCTCG CGCCTGGAGTCGGGCGAGAACGGTGACAGTGAAGTGCAACGTACCATGCTTGAGCTCCTG AACCAGCTGGACGGCTTTGAGGCCTCCAAAAACATCAAGGTGATTATGGCAACCAACCGC ATGGACATCCTTGACGAGGCGCTGCTGCGTCCTGGTCGCATCGACCGTAAGATCGAGTTC CCCGCCCCAGACGAAGCGGCCCGCTTTGAGATTCTCAAGATCCACTCGCGCAAGATGAAT CTGACGCGCGGAATCGACCTCAAGGACATTGCCAAGAAAACGTCCAACTGCTCCGGCGCC GAGCTGAAGGCGGTGTGCACCGAGGCGGGCATGTTTGCCCTACGCGAGCGCCGCGTGCAC ATCACGCACGAGGACTTTGTGCTTGCTGTTGCCAAGGTGATGCACAAGGACCAGGACAAG AATGTGTCGTTGAAGAAGATGTGGAAGTAG
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  • Fasta :-

    MLADVAVPPSSSTAPGSNTAVSDYFLQKIHELRATQKRTLDNFERLEAQRNDLNRRVRHL KEEVQMLQESGSLVVDVVRVMGKNKVLVKAGSGQGKMVVDVDKSVDFKDLTPNARVALRS GTSAIHYILPTKVDPLVSLMKVEKAGKESTYDEIGGLSRQVKEIKEVIELPVKHPKLFEA LGIEQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGAELVQKYIGEGARMVRELFVM AREHSPSIIFMDEIDSIGSSRLESGENGDSEVQRTMLELLNQLDGFEASKNIKVIMATNR MDILDEALLRPGRIDRKIEFPAPDEAARFEILKIHSRKMNLTRGIDLKDIAKKTSNCSGA ELKAVCTEAGMFALRERRVHITHEDFVLAVAKVMHKDQDKNVSLKKMWK

  • title: ATP binding site
  • coordinates: P194,P195,G196,T197,G198,K199,T200,L201,D252,N299
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmxM.36.4360245 SAREHSPSII0.991unspLmxM.36.4360245 SAREHSPSII0.991unspLmxM.36.4360245 SAREHSPSII0.991unspLmxM.36.4360264 SSRLESGENG0.997unspLmxM.36.4360149 SAGKESTYDE0.995unspLmxM.36.4360218 SFIRVSGAEL0.992unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India