LmxM.36.6020 | OTU-like cysteine protease, putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:        

  • Computed_GO_Functions:        

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:  GO:0097014      GO:0005737      GO:0031981      

  • Curated_GO_Components:  ciliary plasm      cytoplasm      nuclear lumen      

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
LmxM.36.6020OTHER0.9995250.0000540.000422
No Results

  • Fasta :-

    >LmxM.36.6020 MSISVRIRTPKSSTPEQVELNSSGTWGEAAALLSRKSEVALERLRVLAGFPPKAVDLAAD SPLRALKLRENDMLIIQEGEAKVQLGNTGERYVPPAPERAHLTRRRCPADNSCLFHACAY VLRDKSRTEGPQLRQECVKAVLDHPEMFNENTLGMDPLAYASWLSEKDTWGGAIELEILS FLYKTEIFALDLQSVTLQRFGTGMGYTVRAFLVYTGNHYDCIAMNPAYNSSSEREDQTLF SSRDENVLARAKRFVAEEGQKMKEGKSA
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/461 Sequence name : 461 Sequence length : 268 VALUES OF COMPUTED PARAMETERS Coef20 : 4.219 CoefTot : 0.099 ChDiff : -2 ZoneTo : 15 KR : 3 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.841 1.112 0.011 0.466 MesoH : -0.351 0.269 -0.341 0.252 MuHd_075 : 24.164 10.287 7.016 3.341 MuHd_095 : 7.695 8.438 2.613 2.696 MuHd_100 : 7.744 9.073 2.317 2.840 MuHd_105 : 7.879 6.911 1.203 2.148 Hmax_075 : 10.267 6.300 1.211 2.380 Hmax_095 : 1.600 6.200 -0.986 2.590 Hmax_100 : 1.600 6.200 -0.986 2.290 Hmax_105 : 4.317 2.800 -0.612 2.147 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8673 0.1327 DFMC : 0.7910 0.2090
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 268 LmxM.36.6020 MSISVRIRTPKSSTPEQVELNSSGTWGEAAALLSRKSEVALERLRVLAGFPPKAVDLAADSPLRALKLRENDMLIIQEGE 80 AKVQLGNTGERYVPPAPERAHLTRRRCPADNSCLFHACAYVLRDKSRTEGPQLRQECVKAVLDHPEMFNENTLGMDPLAY 160 ASWLSEKDTWGGAIELEILSFLYKTEIFALDLQSVTLQRFGTGMGYTVRAFLVYTGNHYDCIAMNPAYNSSSEREDQTLF 240 SSRDENVLARAKRFVAEEGQKMKEGKSA 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ............P............... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ LmxM.36.6020 6 -MSISVR|IR 0.095 . LmxM.36.6020 8 SISVRIR|TP 0.101 . LmxM.36.6020 11 VRIRTPK|SS 0.364 . LmxM.36.6020 35 AAALLSR|KS 0.086 . LmxM.36.6020 36 AALLSRK|SE 0.095 . LmxM.36.6020 43 SEVALER|LR 0.071 . LmxM.36.6020 45 VALERLR|VL 0.063 . LmxM.36.6020 53 LAGFPPK|AV 0.089 . LmxM.36.6020 64 AADSPLR|AL 0.077 . LmxM.36.6020 67 SPLRALK|LR 0.097 . LmxM.36.6020 69 LRALKLR|EN 0.128 . LmxM.36.6020 82 IQEGEAK|VQ 0.056 . LmxM.36.6020 91 LGNTGER|YV 0.119 . LmxM.36.6020 99 VPPAPER|AH 0.076 . LmxM.36.6020 104 ERAHLTR|RR 0.112 . LmxM.36.6020 105 RAHLTRR|RC 0.115 . LmxM.36.6020 106 AHLTRRR|CP 0.102 . LmxM.36.6020 123 ACAYVLR|DK 0.121 . LmxM.36.6020 125 AYVLRDK|SR 0.066 . LmxM.36.6020 127 VLRDKSR|TE 0.167 . LmxM.36.6020 134 TEGPQLR|QE 0.082 . LmxM.36.6020 139 LRQECVK|AV 0.105 . LmxM.36.6020 167 ASWLSEK|DT 0.079 . LmxM.36.6020 184 ILSFLYK|TE 0.070 . LmxM.36.6020 199 QSVTLQR|FG 0.101 . LmxM.36.6020 209 GMGYTVR|AF 0.083 . LmxM.36.6020 234 YNSSSER|ED 0.103 . LmxM.36.6020 243 QTLFSSR|DE 0.086 . LmxM.36.6020 250 DENVLAR|AK 0.096 . LmxM.36.6020 252 NVLARAK|RF 0.060 . LmxM.36.6020 253 VLARAKR|FV 0.809 *ProP* LmxM.36.6020 261 VAEEGQK|MK 0.058 . LmxM.36.6020 263 EEGQKMK|EG 0.064 . LmxM.36.6020 266 QKMKEGK|SA 0.145 . ____________________________^_________________

  • Fasta :-

    >LmxM.36.6020 ATGTCCATCTCTGTACGGATTCGTACACCGAAGAGCAGCACACCGGAGCAGGTGGAACTG AACTCTAGCGGAACTTGGGGCGAGGCTGCCGCCCTGCTGTCCCGGAAATCGGAGGTAGCA CTCGAGCGGCTCCGCGTGCTCGCCGGCTTCCCCCCAAAGGCGGTGGATCTGGCCGCCGAC AGCCCCCTTCGTGCACTCAAGCTACGCGAGAATGACATGCTGATTATTCAAGAGGGAGAG GCTAAGGTGCAGCTGGGTAACACAGGAGAGCGCTATGTTCCTCCGGCCCCTGAGCGGGCT CACCTCACGCGCCGCCGGTGCCCAGCAGACAACAGCTGCCTCTTCCACGCCTGCGCCTAC GTGCTGCGCGACAAGAGCCGCACCGAGGGGCCCCAGCTCCGGCAGGAGTGCGTAAAGGCC GTGCTCGATCACCCCGAAATGTTCAATGAGAATACACTGGGCATGGACCCACTAGCCTAC GCCTCGTGGCTCTCGGAGAAGGACACGTGGGGTGGTGCCATTGAGCTGGAGATACTGTCC TTTCTGTACAAGACGGAGATCTTCGCTTTGGACCTGCAGTCCGTCACCTTGCAGCGCTTT GGCACAGGAATGGGCTACACCGTACGCGCTTTTCTCGTGTACACGGGCAACCACTACGAC TGCATTGCCATGAACCCAGCGTACAATTCCTCCTCAGAGCGCGAGGATCAGACACTGTTC AGCAGCCGAGACGAGAACGTCTTGGCGCGGGCGAAGCGTTTCGTTGCCGAGGAAGGACAG AAGATGAAGGAGGGTAAGTCCGCATAG
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  • Fasta :-

    MSISVRIRTPKSSTPEQVELNSSGTWGEAAALLSRKSEVALERLRVLAGFPPKAVDLAAD SPLRALKLRENDMLIIQEGEAKVQLGNTGERYVPPAPERAHLTRRRCPADNSCLFHACAY VLRDKSRTEGPQLRQECVKAVLDHPEMFNENTLGMDPLAYASWLSEKDTWGGAIELEILS FLYKTEIFALDLQSVTLQRFGTGMGYTVRAFLVYTGNHYDCIAMNPAYNSSSEREDQTLF SSRDENVLARAKRFVAEEGQKMKEGKSA

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmxM.36.6020165 SASWLSEKDT0.993unspLmxM.36.6020165 SASWLSEKDT0.993unspLmxM.36.6020165 SASWLSEKDT0.993unspLmxM.36.6020232 SYNSSSERED0.991unspLmxM.36.6020241 SQTLFSSRDE0.99unspLmxM.36.602013 STPKSSTPEQ0.995unspLmxM.36.6020126 SLRDKSRTEG0.997unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India