NCLIV_011200 | atp-dependent Clp protease proteolytic subunit

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_IDPredictionOTHERSPmTPCS_Position
NCLIV_011200OTHER0.9999990.0000000.000001
No Results

  • Fasta :-

    >NCLIV_011200 MADTAQRQEEEGSEHGAEREDEARGQGERRGAGEEMENESEGEEQGARGRRERTDVFCPS SRPEASAAHLRKRRNAKRTFLSSVFPDSLVSPSISSCEESLVPSRSSTRHCEEREKEKLL PVDILINSPGGSVTAALGILDLFQSLPFDVHTTCVGQAAGVAAMLLAAGTPGCRRAFPSS RLSLRQIEGRVEGQAEAIDRETLEIENVQRMVYRHLAAFCTGRQARRDEREQEREQERER QIEKREKAIREDCEKELFLSAGEAVKYGLIDRVIPVKYRPPWHTVGRPKAD
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NCLIV_011200.fa Sequence name : NCLIV_011200 Sequence length : 291 VALUES OF COMPUTED PARAMETERS Coef20 : 2.774 CoefTot : 0.141 ChDiff : -6 ZoneTo : 2 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.535 1.518 0.283 0.601 MesoH : 0.016 0.641 -0.138 0.283 MuHd_075 : 10.123 5.305 2.619 1.777 MuHd_095 : 48.072 20.056 11.901 7.168 MuHd_100 : 43.238 17.194 10.409 6.694 MuHd_105 : 28.502 9.925 6.587 4.910 Hmax_075 : -14.000 -5.950 -5.263 -1.094 Hmax_095 : 2.275 1.925 -1.141 2.223 Hmax_100 : 1.100 0.400 -1.571 1.920 Hmax_105 : -6.500 -4.550 -3.521 1.237 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9733 0.0267 DFMC : 0.9650 0.0350
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 291 NCLIV_011200 MADTAQRQEEEGSEHGAEREDEARGQGERRGAGEEMENESEGEEQGARGRRERTDVFCPSSRPEASAAHLRKRRNAKRTF 80 LSSVFPDSLVSPSISSCEESLVPSRSSTRHCEEREKEKLLPVDILINSPGGSVTAALGILDLFQSLPFDVHTTCVGQAAG 160 VAAMLLAAGTPGCRRAFPSSRLSLRQIEGRVEGQAEAIDRETLEIENVQRMVYRHLAAFCTGRQARRDEREQEREQERER 240 QIEKREKAIREDCEKELFLSAGEAVKYGLIDRVIPVKYRPPWHTVGRPKAD 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ NCLIV_011200 7 MADTAQR|QE 0.085 . NCLIV_011200 19 SEHGAER|ED 0.118 . NCLIV_011200 24 EREDEAR|GQ 0.122 . NCLIV_011200 29 ARGQGER|RG 0.081 . NCLIV_011200 30 RGQGERR|GA 0.306 . NCLIV_011200 48 GEEQGAR|GR 0.082 . NCLIV_011200 50 EQGARGR|RE 0.074 . NCLIV_011200 51 QGARGRR|ER 0.437 . NCLIV_011200 53 ARGRRER|TD 0.230 . NCLIV_011200 62 VFCPSSR|PE 0.072 . NCLIV_011200 71 ASAAHLR|KR 0.099 . NCLIV_011200 72 SAAHLRK|RR 0.094 . NCLIV_011200 73 AAHLRKR|RN 0.162 . NCLIV_011200 74 AHLRKRR|NA 0.471 . NCLIV_011200 77 RKRRNAK|RT 0.140 . NCLIV_011200 78 KRRNAKR|TF 0.178 . NCLIV_011200 105 ESLVPSR|SS 0.096 . NCLIV_011200 109 PSRSSTR|HC 0.108 . NCLIV_011200 114 TRHCEER|EK 0.173 . NCLIV_011200 116 HCEEREK|EK 0.053 . NCLIV_011200 118 EEREKEK|LL 0.062 . NCLIV_011200 174 AGTPGCR|RA 0.073 . NCLIV_011200 175 GTPGCRR|AF 0.107 . NCLIV_011200 181 RAFPSSR|LS 0.086 . NCLIV_011200 185 SSRLSLR|QI 0.131 . NCLIV_011200 190 LRQIEGR|VE 0.140 . NCLIV_011200 200 QAEAIDR|ET 0.106 . NCLIV_011200 210 EIENVQR|MV 0.138 . NCLIV_011200 214 VQRMVYR|HL 0.112 . NCLIV_011200 223 AAFCTGR|QA 0.111 . NCLIV_011200 226 CTGRQAR|RD 0.354 . NCLIV_011200 227 TGRQARR|DE 0.235 . NCLIV_011200 230 QARRDER|EQ 0.246 . NCLIV_011200 234 DEREQER|EQ 0.091 . NCLIV_011200 238 QEREQER|ER 0.082 . NCLIV_011200 240 REQERER|QI 0.127 . NCLIV_011200 244 RERQIEK|RE 0.061 . NCLIV_011200 245 ERQIEKR|EK 0.247 . NCLIV_011200 247 QIEKREK|AI 0.064 . NCLIV_011200 250 KREKAIR|ED 0.116 . NCLIV_011200 255 IREDCEK|EL 0.062 . NCLIV_011200 266 SAGEAVK|YG 0.058 . NCLIV_011200 272 KYGLIDR|VI 0.071 . NCLIV_011200 277 DRVIPVK|YR 0.064 . NCLIV_011200 279 VIPVKYR|PP 0.078 . NCLIV_011200 287 PWHTVGR|PK 0.112 . NCLIV_011200 289 HTVGRPK|AD 0.071 . ____________________________^_________________

  • Fasta :-

    >NCLIV_011200 ATGGCTGACACTGCGCAGAGACAGGAGGAAGAGGGAAGCGAACACGGAGCAGAACGGGAA GACGAGGCTCGCGGGCAAGGAGAGAGACGAGGAGCAGGCGAGGAGATGGAAAACGAAAGC GAGGGGGAAGAACAGGGAGCGCGCGGAAGGCGAGAGAGAACGGACGTGTTTTGTCCGTCG TCTCGCCCTGAAGCGTCTGCTGCGCATCTGCGCAAAAGAAGAAATGCAAAGAGAACTTTT CTCTCTTCAGTCTTTCCAGATTCCTTGGTCTCGCCCTCAATCTCGTCTTGTGAAGAATCA CTCGTCCCTTCTCGTTCGAGTACGCGACACTGCGAAGAGAGAGAGAAGGAAAAGCTACTT CCGGTTGACATTCTCATCAATTCCCCAGGCGGCTCCGTTACAGCAGCGCTGGGGATTTTG GATCTTTTCCAGTCGCTCCCGTTCGACGTCCACACAACATGCGTCGGCCAAGCTGCAGGT GTCGCCGCGATGCTCCTCGCTGCAGGGACGCCTGGCTGCCGTCGCGCCTTTCCTTCGTCT CGCCTTTCTCTTCGGCAAATCGAAGGCCGGGTAGAAGGCCAGGCGGAAGCAATCGACCGA GAGACGCTCGAGATCGAAAACGTCCAGCGCATGGTGTACAGACACCTCGCGGCCTTCTGC ACTGGCCGCCAAGCTCGGCGAGACGAGAGAGAACAGGAGAGAGAACAAGAGAGAGAAAGG CAGATCGAGAAGAGAGAGAAGGCAATTCGAGAGGACTGCGAAAAAGAGTTGTTTCTTAGC GCCGGCGAGGCGGTGAAGTATGGGCTCATAGACCGAGTCATTCCCGTCAAATACAGACCT CCCTGGCACACAGTGGGGCGCCCAAAAGCCGATTGA
  • Download Fasta

  • Fasta :-

    MADTAQRQEEEGSEHGAEREDEARGQGERRGAGEEMENESEGEEQGARGRRERTDVFCPS SRPEASAAHLRKRRNAKRTFLSSVFPDSLVSPSISSCEESLVPSRSSTRHCEEREKEKLL PVDILINSPGGSVTAALGILDLFQSLPFDVHTTCVGQAAGVAAMLLAAGTPGCRRAFPSS RLSLRQIEGRVEGQAEAIDRETLEIENVQRMVYRHLAAFCTGRQARRDEREQEREQERER QIEKREKAIREDCEKELFLSAGEAVKYGLIDRVIPVKYRPPWHTVGRPKAD

  • title: active site residues
  • coordinates: G160,R185,E256
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
NCLIV_01120096 SPSISSCEES0.99unspNCLIV_011200183 SSSRLSLRQI0.996unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India