NCLIV_011650 | putative methionine aminopeptidase

_IDPredictionOTHERSPmTPCS_Position
NCLIV_011650OTHER0.9194080.0001120.080480
No Results

  • Fasta :-

    >NCLIV_011650 MPLVRISSPSACSSSARFSSSSSPRLPSAGASSPEAPSCPVLRPINPGHVSPQRQVAPGV VKPHYAEEDEGRAKAKREAMLNEELQLRRREDAAMKASLSRFQPVAEREMEWVKPPTEIE GVRRACEVTAEVLQVAVDFVKDFCATSAAALTTEDIDRVVHEAAMKRGAYPSPLRYSNFP KSVCTSTNEIVCHGIPDDRPLQRGSICSIDVSCFLDGFHGDCARTVPIGGFESLSPALRR LLACAREATLEGVRVCAPGRRLSVIGEAIEEFLTRRGYRTIHDFCGHGIGRNFHEEPFVL HASNNMPGRMLPGMCFTIEPVVCMGGTDFTTWPDKWTIATTDGKPTAQFEHTVLITDTGV EVLTGCPDGEKDMLELTRDVR
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NCLIV_011650.fa Sequence name : NCLIV_011650 Sequence length : 381 VALUES OF COMPUTED PARAMETERS Coef20 : 4.953 CoefTot : -1.391 ChDiff : -6 ZoneTo : 66 KR : 6 DE : 1 CleavSite : 56 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.447 1.271 0.267 0.546 MesoH : -0.277 0.383 -0.257 0.211 MuHd_075 : 24.754 23.389 8.581 6.096 MuHd_095 : 29.948 19.316 7.249 7.760 MuHd_100 : 28.426 17.284 6.687 7.486 MuHd_105 : 27.485 15.179 6.738 6.137 Hmax_075 : 9.100 11.375 1.474 4.120 Hmax_095 : 6.038 8.925 2.606 3.850 Hmax_100 : 6.900 11.500 2.766 4.900 Hmax_105 : 11.550 11.667 2.223 4.690 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0810 0.9190 DFMC : 0.1012 0.8988 This protein is probably imported in chloroplast. f(Ser) = 0.2424 f(Arg) = 0.0758 CMi = 1.37694 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 381 NCLIV_011650 MPLVRISSPSACSSSARFSSSSSPRLPSAGASSPEAPSCPVLRPINPGHVSPQRQVAPGVVKPHYAEEDEGRAKAKREAM 80 LNEELQLRRREDAAMKASLSRFQPVAEREMEWVKPPTEIEGVRRACEVTAEVLQVAVDFVKDFCATSAAALTTEDIDRVV 160 HEAAMKRGAYPSPLRYSNFPKSVCTSTNEIVCHGIPDDRPLQRGSICSIDVSCFLDGFHGDCARTVPIGGFESLSPALRR 240 LLACAREATLEGVRVCAPGRRLSVIGEAIEEFLTRRGYRTIHDFCGHGIGRNFHEEPFVLHASNNMPGRMLPGMCFTIEP 320 VVCMGGTDFTTWPDKWTIATTDGKPTAQFEHTVLITDTGVEVLTGCPDGEKDMLELTRDVR 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ............................................................. 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ NCLIV_011650 5 --MPLVR|IS 0.099 . NCLIV_011650 17 ACSSSAR|FS 0.159 . NCLIV_011650 25 SSSSSPR|LP 0.158 . NCLIV_011650 43 PSCPVLR|PI 0.129 . NCLIV_011650 54 GHVSPQR|QV 0.132 . NCLIV_011650 62 VAPGVVK|PH 0.065 . NCLIV_011650 72 AEEDEGR|AK 0.108 . NCLIV_011650 74 EDEGRAK|AK 0.067 . NCLIV_011650 76 EGRAKAK|RE 0.067 . NCLIV_011650 77 GRAKAKR|EA 0.386 . NCLIV_011650 88 NEELQLR|RR 0.076 . NCLIV_011650 89 EELQLRR|RE 0.105 . NCLIV_011650 90 ELQLRRR|ED 0.111 . NCLIV_011650 96 REDAAMK|AS 0.056 . NCLIV_011650 101 MKASLSR|FQ 0.116 . NCLIV_011650 108 FQPVAER|EM 0.079 . NCLIV_011650 114 REMEWVK|PP 0.065 . NCLIV_011650 123 TEIEGVR|RA 0.100 . NCLIV_011650 124 EIEGVRR|AC 0.131 . NCLIV_011650 141 VAVDFVK|DF 0.069 . NCLIV_011650 158 TTEDIDR|VV 0.108 . NCLIV_011650 166 VHEAAMK|RG 0.052 . NCLIV_011650 167 HEAAMKR|GA 0.294 . NCLIV_011650 175 AYPSPLR|YS 0.064 . NCLIV_011650 181 RYSNFPK|SV 0.244 . NCLIV_011650 199 HGIPDDR|PL 0.077 . NCLIV_011650 203 DDRPLQR|GS 0.114 . NCLIV_011650 224 FHGDCAR|TV 0.133 . NCLIV_011650 239 SLSPALR|RL 0.089 . NCLIV_011650 240 LSPALRR|LL 0.136 . NCLIV_011650 246 RLLACAR|EA 0.089 . NCLIV_011650 254 ATLEGVR|VC 0.067 . NCLIV_011650 260 RVCAPGR|RL 0.104 . NCLIV_011650 261 VCAPGRR|LS 0.128 . NCLIV_011650 275 IEEFLTR|RG 0.090 . NCLIV_011650 276 EEFLTRR|GY 0.135 . NCLIV_011650 279 LTRRGYR|TI 0.352 . NCLIV_011650 291 CGHGIGR|NF 0.097 . NCLIV_011650 309 SNNMPGR|ML 0.142 . NCLIV_011650 335 FTTWPDK|WT 0.066 . NCLIV_011650 344 IATTDGK|PT 0.073 . NCLIV_011650 371 GCPDGEK|DM 0.056 . NCLIV_011650 378 DMLELTR|DV 0.129 . NCLIV_011650 381 ELTRDVR|-- 0.165 . ____________________________^_________________

  • Fasta :-

    >NCLIV_011650 ATGCCACTCGTGCGCATCAGCTCTCCGTCCGCCTGTTCTTCTTCAGCTCGCTTCTCTTCT TCATCTTCACCTCGCCTTCCTTCTGCAGGCGCGTCCTCTCCGGAGGCGCCTTCATGTCCC GTTCTACGCCCCATCAACCCTGGCCATGTGTCACCCCAGCGCCAGGTTGCTCCGGGGGTT GTGAAGCCTCACTACGCCGAGGAGGACGAGGGGCGAGCCAAAGCCAAGCGGGAGGCCATG CTGAACGAAGAGCTGCAGTTGCGACGACGCGAAGACGCTGCGATGAAGGCCAGCCTCTCG CGCTTTCAGCCGGTGGCTGAAAGGGAGATGGAGTGGGTGAAACCTCCGACAGAAATCGAA GGTGTCCGCCGCGCGTGCGAGGTGACTGCCGAGGTTCTGCAAGTCGCCGTCGATTTTGTG AAGGATTTTTGTGCGACTTCCGCGGCCGCGCTAACGACCGAAGACATCGATCGTGTTGTG CACGAGGCAGCGATGAAACGGGGCGCCTATCCATCTCCCCTTCGCTACAGCAACTTCCCG AAAAGCGTCTGTACCTCGACAAACGAAATCGTCTGCCACGGCATTCCTGATGACAGACCG CTTCAACGGGGGAGCATTTGCAGCATCGACGTCTCCTGTTTCCTCGATGGCTTTCATGGC GACTGTGCGCGAACAGTTCCAATTGGCGGTTTCGAGTCTCTCTCTCCAGCACTTCGCCGC TTGCTTGCCTGTGCTCGAGAGGCGACGCTCGAAGGTGTTCGCGTCTGTGCGCCCGGCAGG AGGCTGAGCGTGATTGGCGAAGCAATTGAAGAGTTCCTGACGCGCCGGGGCTACCGAACG ATTCATGATTTCTGCGGCCATGGCATCGGCCGAAATTTCCACGAGGAGCCTTTTGTTCTT CACGCGTCGAATAACATGCCGGGGCGAATGCTCCCAGGGATGTGCTTTACCATCGAACCT GTCGTCTGCATGGGCGGAACAGATTTCACCACGTGGCCCGACAAATGGACGATCGCTACC ACTGACGGAAAGCCGACGGCTCAATTCGAGCACACAGTCCTCATTACCGATACCGGCGTC GAAGTACTGACTGGGTGTCCAGACGGAGAGAAGGACATGCTGGAGTTGACCAGGGACGTG CGCTGA
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  • Fasta :-

    MPLVRISSPSACSSSARFSSSSSPRLPSAGASSPEAPSCPVLRPINPGHVSPQRQVAPGV VKPHYAEEDEGRAKAKREAMLNEELQLRRREDAAMKASLSRFQPVAEREMEWVKPPTEIE GVRRACEVTAEVLQVAVDFVKDFCATSAAALTTEDIDRVVHEAAMKRGAYPSPLRYSNFP KSVCTSTNEIVCHGIPDDRPLQRGSICSIDVSCFLDGFHGDCARTVPIGGFESLSPALRR LLACAREATLEGVRVCAPGRRLSVIGEAIEEFLTRRGYRTIHDFCGHGIGRNFHEEPFVL HASNNMPGRMLPGMCFTIEPVVCMGGTDFTTWPDKWTIATTDGKPTAQFEHTVLITDTGV EVLTGCPDGEKDMLELTRDVR

  • title: active site
  • coordinates: H193,D210,D221,H287,E319,E350
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
NCLIV_01165033 SAGASSPEAP0.995unspNCLIV_01165033 SAGASSPEAP0.995unspNCLIV_01165033 SAGASSPEAP0.995unspNCLIV_011650263 SGRRLSVIGE0.995unspNCLIV_01165019 SSARFSSSSS0.995unspNCLIV_01165023 SSSSSSPRLP0.994unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India