NCLIV_013010 | Rhomboid family 1 (Predicted), related

  • Computed_GO_Component_IDs:  GO:0016021      

  • Computed_GO_Components:  integral component of membrane      

  • Computed_GO_Function_IDs:  GO:0004252      

  • Computed_GO_Functions:  serine-type endopeptidase activity      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
NCLIV_013010OTHER0.9999950.0000010.000004
No Results

  • Fasta :-

    >NCLIV_013010 MASSRGSDMEAQSLLGGGEPALRSWKERVFPGLSCDKSILWITTAQIVMYVVSCVLSKSY QPNEQTLMLLGAAYAPAFSNLQLWRVVTPLFLHATILHLVLNLVFILHISLRLEERYGTK KFLATYFFSAIVGNLLSMLVQPWALSVGASTAGFGVVGGLTAELSAVWGKLSEELKQMYS FDVCLLAVLIYFLSFGRTVDTYGHLGGFLAGVAVVCYYNKDVEDLPKWFNFMYYVCSALC AVTLVVSPLVLLLHYPYRVASAEL
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NCLIV_013010.fa Sequence name : NCLIV_013010 Sequence length : 264 VALUES OF COMPUTED PARAMETERS Coef20 : 3.231 CoefTot : 0.362 ChDiff : 0 ZoneTo : 7 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.035 2.459 0.557 0.764 MesoH : 0.739 1.089 -0.034 0.472 MuHd_075 : 7.683 7.785 1.446 1.850 MuHd_095 : 14.167 8.358 4.334 3.757 MuHd_100 : 13.516 5.888 3.956 3.023 MuHd_105 : 12.110 4.844 3.172 2.060 Hmax_075 : 5.337 3.967 -0.685 2.004 Hmax_095 : 10.000 6.600 1.316 2.760 Hmax_100 : 10.000 6.600 1.316 2.760 Hmax_105 : 11.000 5.100 1.108 2.960 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9814 0.0186 DFMC : 0.9773 0.0227
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 264 NCLIV_013010 MASSRGSDMEAQSLLGGGEPALRSWKERVFPGLSCDKSILWITTAQIVMYVVSCVLSKSYQPNEQTLMLLGAAYAPAFSN 80 LQLWRVVTPLFLHATILHLVLNLVFILHISLRLEERYGTKKFLATYFFSAIVGNLLSMLVQPWALSVGASTAGFGVVGGL 160 TAELSAVWGKLSEELKQMYSFDVCLLAVLIYFLSFGRTVDTYGHLGGFLAGVAVVCYYNKDVEDLPKWFNFMYYVCSALC 240 AVTLVVSPLVLLLHYPYRVASAEL 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ........................ 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ NCLIV_013010 5 --MASSR|GS 0.119 . NCLIV_013010 23 GGEPALR|SW 0.095 . NCLIV_013010 26 PALRSWK|ER 0.077 . NCLIV_013010 28 LRSWKER|VF 0.120 . NCLIV_013010 37 PGLSCDK|SI 0.069 . NCLIV_013010 58 VSCVLSK|SY 0.095 . NCLIV_013010 85 SNLQLWR|VV 0.120 . NCLIV_013010 112 ILHISLR|LE 0.096 . NCLIV_013010 116 SLRLEER|YG 0.103 . NCLIV_013010 120 EERYGTK|KF 0.057 . NCLIV_013010 121 ERYGTKK|FL 0.132 . NCLIV_013010 170 LSAVWGK|LS 0.071 . NCLIV_013010 176 KLSEELK|QM 0.065 . NCLIV_013010 197 YFLSFGR|TV 0.115 . NCLIV_013010 220 VVCYYNK|DV 0.098 . NCLIV_013010 227 DVEDLPK|WF 0.058 . NCLIV_013010 258 LLHYPYR|VA 0.150 . ____________________________^_________________

  • Fasta :-

    >NCLIV_013010 ATGGCTTCTTCTCGCGGATCAGACATGGAGGCTCAAAGCCTCCTGGGAGGCGGCGAGCCT GCGTTGAGAAGCTGGAAAGAGAGAGTGTTCCCTGGACTTTCATGTGACAAGTCTATTCTG TGGATTACCACTGCACAGATCGTCATGTATGTTGTATCGTGCGTGTTATCGAAGAGCTAT CAGCCGAATGAACAGACGCTCATGCTCCTCGGGGCCGCTTACGCACCAGCTTTCAGCAAT CTACAGCTCTGGCGGGTTGTTACCCCGTTGTTCCTCCATGCGACAATTCTGCATTTAGTC CTTAACTTGGTCTTTATTCTGCATATCAGTCTCAGATTGGAGGAGCGCTACGGGACAAAG AAGTTCCTGGCAACCTACTTTTTCTCCGCTATTGTCGGAAACCTACTGTCAATGTTGGTG CAGCCGTGGGCCTTGTCGGTGGGCGCTAGCACTGCAGGTTTCGGCGTCGTTGGCGGTCTG ACGGCAGAGCTCAGTGCGGTCTGGGGCAAGCTCTCCGAAGAATTGAAGCAAATGTACTCC TTTGACGTTTGCCTTCTCGCTGTGTTGATATATTTTCTGTCGTTTGGGCGAACAGTGGAC ACGTACGGCCATCTGGGAGGGTTCTTGGCTGGCGTAGCTGTGGTATGCTACTATAATAAA GATGTAGAGGACTTACCCAAGTGGTTCAACTTCATGTACTATGTATGCTCTGCTCTCTGC GCGGTTACGCTTGTTGTGTCACCCCTCGTTTTACTCCTACACTACCCGTACCGTGTGGCC TCGGCTGAGCTGTGA
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  • Fasta :-

    MASSRGSDMEAQSLLGGGEPALRSWKERVFPGLSCDKSILWITTAQIVMYVVSCVLSKSY QPNEQTLMLLGAAYAPAFSNLQLWRVVTPLFLHATILHLVLNLVFILHISLRLEERYGTK KFLATYFFSAIVGNLLSMLVQPWALSVGASTAGFGVVGGLTAELSAVWGKLSEELKQMYS FDVCLLAVLIYFLSFGRTVDTYGHLGGFLAGVAVVCYYNKDVEDLPKWFNFMYYVCSALC AVTLVVSPLVLLLHYPYRVASAEL

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
NCLIV_0130107 SSSRGSDMEA0.996unspNCLIV_01301024 SPALRSWKER0.992unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India