NCLIV_013620 | Ubiquitin carboxyl-terminal hydrolase, related

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0008270      

  • Computed_GO_Functions:  zinc ion binding      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
NCLIV_013620OTHER0.9998440.0001440.000012
No Results

  • Fasta :-

    >NCLIV_013620 MAGAQSAGEATLPGSPFFGAFAETAPQDATEEVLKELRTLLGQARVATCMDTVVKTQCTY SLDSPLSPCGLFVNLSTFFAASIDALPLDCVLTKETASTQATSRSASAAKQICPRQRLYL HVYSKVDDEQAAKIHRKLHEAEGRTPDAKDQALPSQDEADVAAEEERASAQPHKLAINVE GGFQIEENSGDACPETLSNTFVYSLALLPPVLELPPTSYRSTYLAAASPAPDAQAAAKAQ ETWEKSVLRQLKFLQINTVPEALRAACQALIEHRGFGGGAASTAIGAWEEELKPSRYAAN LEQVPQPPLVGPTDWRCADCGATANLWLNLSDGYIGCGRKLYGVGGGCADGREGAAIRHF EETGQKYPLIVKLGTITPYSADVYCYAPDEDCTVLDPHLPEHLAHFGINVQQVR
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NCLIV_013620.fa Sequence name : NCLIV_013620 Sequence length : 414 VALUES OF COMPUTED PARAMETERS Coef20 : 3.333 CoefTot : -0.702 ChDiff : -18 ZoneTo : 22 KR : 0 DE : 1 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.565 1.424 0.226 0.568 MesoH : -0.133 0.479 -0.183 0.210 MuHd_075 : 18.602 14.904 4.524 4.520 MuHd_095 : 17.264 9.581 5.156 2.675 MuHd_100 : 19.827 13.059 5.331 3.646 MuHd_105 : 20.917 14.746 5.201 4.399 Hmax_075 : 14.700 11.000 1.720 5.200 Hmax_095 : 12.950 11.025 1.624 4.410 Hmax_100 : 16.500 10.900 1.892 5.270 Hmax_105 : 15.837 12.400 2.082 5.360 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9946 0.0054 DFMC : 0.9881 0.0119
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 414 NCLIV_013620 MAGAQSAGEATLPGSPFFGAFAETAPQDATEEVLKELRTLLGQARVATCMDTVVKTQCTYSLDSPLSPCGLFVNLSTFFA 80 ASIDALPLDCVLTKETASTQATSRSASAAKQICPRQRLYLHVYSKVDDEQAAKIHRKLHEAEGRTPDAKDQALPSQDEAD 160 VAAEEERASAQPHKLAINVEGGFQIEENSGDACPETLSNTFVYSLALLPPVLELPPTSYRSTYLAAASPAPDAQAAAKAQ 240 ETWEKSVLRQLKFLQINTVPEALRAACQALIEHRGFGGGAASTAIGAWEEELKPSRYAANLEQVPQPPLVGPTDWRCADC 320 GATANLWLNLSDGYIGCGRKLYGVGGGCADGREGAAIRHFEETGQKYPLIVKLGTITPYSADVYCYAPDEDCTVLDPHLP 400 EHLAHFGINVQQVR 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 .............. 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ NCLIV_013620 35 ATEEVLK|EL 0.067 . NCLIV_013620 38 EVLKELR|TL 0.067 . NCLIV_013620 45 TLLGQAR|VA 0.096 . NCLIV_013620 55 CMDTVVK|TQ 0.057 . NCLIV_013620 94 LDCVLTK|ET 0.066 . NCLIV_013620 104 STQATSR|SA 0.208 . NCLIV_013620 110 RSASAAK|QI 0.085 . NCLIV_013620 115 AKQICPR|QR 0.075 . NCLIV_013620 117 QICPRQR|LY 0.087 . NCLIV_013620 125 YLHVYSK|VD 0.063 . NCLIV_013620 133 DDEQAAK|IH 0.057 . NCLIV_013620 136 QAAKIHR|KL 0.122 . NCLIV_013620 137 AAKIHRK|LH 0.118 . NCLIV_013620 144 LHEAEGR|TP 0.094 . NCLIV_013620 149 GRTPDAK|DQ 0.064 . NCLIV_013620 167 VAAEEER|AS 0.081 . NCLIV_013620 174 ASAQPHK|LA 0.097 . NCLIV_013620 220 LPPTSYR|ST 0.125 . NCLIV_013620 238 DAQAAAK|AQ 0.085 . NCLIV_013620 245 AQETWEK|SV 0.109 . NCLIV_013620 249 WEKSVLR|QL 0.084 . NCLIV_013620 252 SVLRQLK|FL 0.136 . NCLIV_013620 264 TVPEALR|AA 0.118 . NCLIV_013620 274 QALIEHR|GF 0.123 . NCLIV_013620 293 AWEEELK|PS 0.062 . NCLIV_013620 296 EELKPSR|YA 0.091 . NCLIV_013620 316 VGPTDWR|CA 0.102 . NCLIV_013620 339 GYIGCGR|KL 0.092 . NCLIV_013620 340 YIGCGRK|LY 0.088 . NCLIV_013620 352 GGCADGR|EG 0.100 . NCLIV_013620 358 REGAAIR|HF 0.095 . NCLIV_013620 366 FEETGQK|YP 0.056 . NCLIV_013620 372 KYPLIVK|LG 0.051 . NCLIV_013620 414 INVQQVR|-- 0.096 . ____________________________^_________________

  • Fasta :-

    >NCLIV_013620 ATGGCCGGCGCGCAGAGTGCAGGAGAGGCTACTCTCCCCGGCTCGCCGTTCTTTGGAGCC TTTGCAGAAACGGCGCCTCAGGACGCAACAGAGGAAGTTTTGAAAGAGCTCCGGACCTTG CTGGGCCAGGCGCGCGTGGCCACTTGCATGGACACGGTGGTGAAAACGCAGTGTACATAC AGCTTGGACAGCCCGCTGTCACCGTGCGGCCTGTTTGTGAATTTGTCAACTTTCTTCGCG GCCTCCATCGACGCCCTTCCCCTGGACTGTGTGCTCACCAAGGAAACAGCGTCAACCCAG GCGACCTCGCGTTCCGCCTCTGCTGCGAAACAAATTTGTCCTCGACAGCGCTTGTATCTC CACGTTTATTCGAAAGTCGACGATGAGCAGGCCGCGAAGATACACCGGAAACTCCATGAA GCGGAAGGGCGAACTCCCGATGCGAAAGACCAGGCTCTTCCCTCCCAAGACGAAGCAGAT GTCGCCGCCGAAGAGGAAAGAGCATCGGCACAGCCGCACAAACTCGCTATCAACGTGGAA GGAGGTTTCCAGATCGAAGAGAACAGCGGAGACGCGTGTCCAGAAACTCTCAGCAACACG TTTGTTTACTCTCTCGCGCTGCTTCCGCCCGTCCTCGAACTGCCGCCCACGAGCTACCGC TCCACCTACCTTGCCGCTGCGTCTCCGGCGCCGGACGCTCAAGCAGCTGCGAAGGCACAG GAAACCTGGGAAAAGAGCGTCTTGCGGCAGCTGAAATTTCTGCAAATCAACACGGTGCCC GAGGCCCTCCGAGCAGCCTGCCAAGCGCTGATCGAGCATCGCGGATTCGGAGGCGGCGCT GCCTCAACTGCCATTGGCGCGTGGGAAGAAGAACTGAAGCCGAGTCGCTATGCGGCAAAT CTGGAGCAAGTGCCGCAGCCTCCGCTGGTGGGACCGACCGACTGGCGGTGCGCCGACTGT GGGGCGACAGCCAATCTGTGGCTGAATCTCTCTGACGGATACATTGGATGTGGCCGAAAA CTCTACGGCGTCGGAGGAGGTTGCGCAGACGGACGGGAAGGAGCAGCGATCCGCCACTTT GAGGAGACTGGCCAGAAATACCCGCTGATCGTGAAGCTCGGTACCATCACGCCGTACTCG GCCGACGTTTACTGCTACGCCCCCGACGAGGACTGCACAGTCTTGGACCCGCACCTCCCC GAACACCTCGCGCACTTTGGAATCAACGTGCAACAGGTGCGGTGA
  • Download Fasta

  • Fasta :-

    MAGAQSAGEATLPGSPFFGAFAETAPQDATEEVLKELRTLLGQARVATCMDTVVKTQCTY SLDSPLSPCGLFVNLSTFFAASIDALPLDCVLTKETASTQATSRSASAAKQICPRQRLYL HVYSKVDDEQAAKIHRKLHEAEGRTPDAKDQALPSQDEADVAAEEERASAQPHKLAINVE GGFQIEENSGDACPETLSNTFVYSLALLPPVLELPPTSYRSTYLAAASPAPDAQAAAKAQ ETWEKSVLRQLKFLQINTVPEALRAACQALIEHRGFGGGAASTAIGAWEEELKPSRYAAN LEQVPQPPLVGPTDWRCADCGATANLWLNLSDGYIGCGRKLYGVGGGCADGREGAAIRHF EETGQKYPLIVKLGTITPYSADVYCYAPDEDCTVLDPHLPEHLAHFGINVQQVR

    No Results
No Results
No Results
IDSitePeptideScoreMethod
NCLIV_013620155 SQALPSQDEA0.991unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India