NCLIV_016120 | putative proteasome subunit alpha type 4, subunit

_IDPredictionOTHERSPmTPCS_Position
NCLIV_016120OTHER0.9999170.0000320.000051
No Results

  • Fasta :-

    >NCLIV_016120 MARRYDSRTTTFSPEGRLYQVEYALEAINNASSTLGILAQDGVVLAADKMVTSKLLDQGR TKEKIYKVDDHVMCAVAGLTADANILISQARLIGQRYLYAYDEPQPIEQLVLQICDVKQS YTQFGGLRPFGVSFLFAGWDRHYGFQLYHTDPSGNYSGWKATAIGVNSQSAQSILKQEWK EDLDVDAALLLAAKVLNKTMDTGAPSAEKLEIAIVRKDPADDSRLIQRVLTNEEVTALIK KAQELQAEEQTP
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NCLIV_016120.fa Sequence name : NCLIV_016120 Sequence length : 252 VALUES OF COMPUTED PARAMETERS Coef20 : 4.248 CoefTot : 0.254 ChDiff : -6 ZoneTo : 5 KR : 2 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.035 1.629 0.195 0.540 MesoH : -0.599 0.309 -0.352 0.203 MuHd_075 : 23.056 5.387 3.615 6.134 MuHd_095 : 14.841 4.720 3.134 2.857 MuHd_100 : 18.488 8.050 3.829 4.676 MuHd_105 : 19.679 11.334 4.048 6.197 Hmax_075 : -3.850 -2.975 -3.651 0.210 Hmax_095 : -1.312 -1.050 -2.054 0.411 Hmax_100 : 10.800 3.300 0.402 2.970 Hmax_105 : -1.283 -0.933 -1.926 2.065 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9174 0.0826 DFMC : 0.8881 0.1119
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 252 NCLIV_016120 MARRYDSRTTTFSPEGRLYQVEYALEAINNASSTLGILAQDGVVLAADKMVTSKLLDQGRTKEKIYKVDDHVMCAVAGLT 80 ADANILISQARLIGQRYLYAYDEPQPIEQLVLQICDVKQSYTQFGGLRPFGVSFLFAGWDRHYGFQLYHTDPSGNYSGWK 160 ATAIGVNSQSAQSILKQEWKEDLDVDAALLLAAKVLNKTMDTGAPSAEKLEIAIVRKDPADDSRLIQRVLTNEEVTALIK 240 KAQELQAEEQTP 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ............ 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ NCLIV_016120 3 ----MAR|RY 0.096 . NCLIV_016120 4 ---MARR|YD 0.146 . NCLIV_016120 8 ARRYDSR|TT 0.106 . NCLIV_016120 17 TFSPEGR|LY 0.096 . NCLIV_016120 49 VVLAADK|MV 0.067 . NCLIV_016120 54 DKMVTSK|LL 0.082 . NCLIV_016120 60 KLLDQGR|TK 0.095 . NCLIV_016120 62 LDQGRTK|EK 0.065 . NCLIV_016120 64 QGRTKEK|IY 0.067 . NCLIV_016120 67 TKEKIYK|VD 0.073 . NCLIV_016120 91 ILISQAR|LI 0.116 . NCLIV_016120 96 ARLIGQR|YL 0.089 . NCLIV_016120 118 LQICDVK|QS 0.068 . NCLIV_016120 128 TQFGGLR|PF 0.094 . NCLIV_016120 141 LFAGWDR|HY 0.118 . NCLIV_016120 160 GNYSGWK|AT 0.077 . NCLIV_016120 176 SAQSILK|QE 0.062 . NCLIV_016120 180 ILKQEWK|ED 0.064 . NCLIV_016120 194 ALLLAAK|VL 0.060 . NCLIV_016120 198 AAKVLNK|TM 0.067 . NCLIV_016120 209 GAPSAEK|LE 0.056 . NCLIV_016120 216 LEIAIVR|KD 0.074 . NCLIV_016120 217 EIAIVRK|DP 0.086 . NCLIV_016120 224 DPADDSR|LI 0.107 . NCLIV_016120 228 DSRLIQR|VL 0.105 . NCLIV_016120 240 EVTALIK|KA 0.057 . NCLIV_016120 241 VTALIKK|AQ 0.088 . ____________________________^_________________

  • Fasta :-

    >NCLIV_016120 ATGGCGCGTCGCTACGATTCCCGAACCACGACCTTCTCGCCGGAAGGGCGTCTCTACCAA GTTGAATACGCACTGGAGGCAATCAACAACGCTTCTTCCACTCTCGGGATTCTTGCGCAA GATGGAGTGGTCCTCGCTGCAGACAAAATGGTCACTTCCAAGCTTCTCGACCAGGGAAGA ACCAAGGAAAAGATCTACAAGGTCGATGACCACGTCATGTGCGCCGTTGCAGGCCTAACT GCAGATGCAAACATTCTGATCAGCCAGGCTCGCCTGATCGGACAGCGCTACCTCTACGCG TACGACGAGCCGCAGCCGATTGAGCAGCTGGTGCTTCAAATCTGTGACGTCAAGCAATCG TACACTCAGTTCGGTGGTCTGCGCCCCTTTGGAGTGAGCTTCCTCTTTGCTGGATGGGAT CGTCACTACGGCTTCCAGCTCTACCACACGGACCCCTCAGGCAATTACTCTGGGTGGAAG GCGACAGCTATTGGCGTCAACAGTCAGTCGGCGCAGTCGATTCTGAAACAGGAGTGGAAA GAGGACTTGGACGTTGACGCAGCTTTGCTGTTGGCCGCCAAGGTACTGAACAAAACGATG GACACGGGAGCCCCGAGTGCAGAAAAACTGGAGATCGCGATTGTGAGGAAAGACCCGGCT GATGATTCGCGTCTGATTCAGCGCGTGCTGACAAACGAAGAGGTTACTGCACTCATCAAA AAGGCTCAAGAGCTCCAGGCTGAAGAACAGACGCCGTAG
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  • Fasta :-

    MARRYDSRTTTFSPEGRLYQVEYALEAINNASSTLGILAQDGVVLAADKMVTSKLLDQGR TKEKIYKVDDHVMCAVAGLTADANILISQARLIGQRYLYAYDEPQPIEQLVLQICDVKQS YTQFGGLRPFGVSFLFAGWDRHYGFQLYHTDPSGNYSGWKATAIGVNSQSAQSILKQEWK EDLDVDAALLLAAKVLNKTMDTGAPSAEKLEIAIVRKDPADDSRLIQRVLTNEEVTALIK KAQELQAEEQTP

    No Results
  • title: active site
  • coordinates: S32,D48,M50,K64,V166
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
NCLIV_0161207 SRRYDSRTTT0.992unspNCLIV_01612013 STTTFSPEGR0.99unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India