NCLIV_017470 | Proteasome subunit alpha type

_IDPredictionOTHERSPmTPCS_Position
NCLIV_017470OTHER0.9998670.0000830.000051
No Results

  • Fasta :-

    >NCLIV_017470 MAGRSTQAMYDRHITIFSPDGNLYQVEYAMKAVRNCNLTCVAMKGDDSACIVVQKKVAAQ QLTQDKHLDSSFVSSLYTLSPTIGSCLVGVFPDCRSIAFRARQEAGEFAYKNGYDMPVYA LAKRIADINQVYTQFAYMRLHACTGIMISYDEEAGPSIYKFDPAGFFAGYKASRNLFLRA TRYTTSGSPHSTLGLCRSQVLVSYAKERKAGMTEACASGTKEQEATNILEKMVKKRPRTT PKEVIECAISAMQHVLAMDFKASDIEVGVVTKDHPAFRILSEQEVEDHLTSIAERE
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NCLIV_017470.fa Sequence name : NCLIV_017470 Sequence length : 296 VALUES OF COMPUTED PARAMETERS Coef20 : 3.929 CoefTot : -0.033 ChDiff : 2 ZoneTo : 10 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.629 1.300 0.322 0.552 MesoH : -0.570 0.303 -0.302 0.161 MuHd_075 : 12.898 4.354 3.748 1.881 MuHd_095 : 31.617 13.699 5.382 6.590 MuHd_100 : 26.678 11.792 4.742 5.980 MuHd_105 : 18.536 6.850 3.589 4.122 Hmax_075 : 12.833 6.417 0.764 3.162 Hmax_095 : 12.250 7.175 -0.397 3.386 Hmax_100 : 10.600 6.600 -0.590 3.670 Hmax_105 : 8.700 4.550 -0.861 3.530 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8210 0.1790 DFMC : 0.7859 0.2141
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 296 NCLIV_017470 MAGRSTQAMYDRHITIFSPDGNLYQVEYAMKAVRNCNLTCVAMKGDDSACIVVQKKVAAQQLTQDKHLDSSFVSSLYTLS 80 PTIGSCLVGVFPDCRSIAFRARQEAGEFAYKNGYDMPVYALAKRIADINQVYTQFAYMRLHACTGIMISYDEEAGPSIYK 160 FDPAGFFAGYKASRNLFLRATRYTTSGSPHSTLGLCRSQVLVSYAKERKAGMTEACASGTKEQEATNILEKMVKKRPRTT 240 PKEVIECAISAMQHVLAMDFKASDIEVGVVTKDHPAFRILSEQEVEDHLTSIAERE 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ........................................................ 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ NCLIV_017470 4 ---MAGR|ST 0.144 . NCLIV_017470 12 TQAMYDR|HI 0.109 . NCLIV_017470 31 QVEYAMK|AV 0.074 . NCLIV_017470 34 YAMKAVR|NC 0.071 . NCLIV_017470 44 LTCVAMK|GD 0.068 . NCLIV_017470 55 ACIVVQK|KV 0.092 . NCLIV_017470 56 CIVVQKK|VA 0.141 . NCLIV_017470 66 QQLTQDK|HL 0.069 . NCLIV_017470 95 GVFPDCR|SI 0.104 . NCLIV_017470 100 CRSIAFR|AR 0.137 . NCLIV_017470 102 SIAFRAR|QE 0.108 . NCLIV_017470 111 AGEFAYK|NG 0.059 . NCLIV_017470 123 PVYALAK|RI 0.065 . NCLIV_017470 124 VYALAKR|IA 0.216 . NCLIV_017470 139 TQFAYMR|LH 0.088 . NCLIV_017470 160 AGPSIYK|FD 0.064 . NCLIV_017470 171 GFFAGYK|AS 0.056 . NCLIV_017470 174 AGYKASR|NL 0.074 . NCLIV_017470 179 SRNLFLR|AT 0.121 . NCLIV_017470 182 LFLRATR|YT 0.226 . NCLIV_017470 197 STLGLCR|SQ 0.086 . NCLIV_017470 206 VLVSYAK|ER 0.061 . NCLIV_017470 208 VSYAKER|KA 0.158 . NCLIV_017470 209 SYAKERK|AG 0.091 . NCLIV_017470 221 ACASGTK|EQ 0.058 . NCLIV_017470 231 ATNILEK|MV 0.083 . NCLIV_017470 234 ILEKMVK|KR 0.056 . NCLIV_017470 235 LEKMVKK|RP 0.087 . NCLIV_017470 236 EKMVKKR|PR 0.187 . NCLIV_017470 238 MVKKRPR|TT 0.112 . NCLIV_017470 242 RPRTTPK|EV 0.094 . NCLIV_017470 261 VLAMDFK|AS 0.075 . NCLIV_017470 272 EVGVVTK|DH 0.065 . NCLIV_017470 278 KDHPAFR|IL 0.160 . NCLIV_017470 295 LTSIAER|E- 0.102 . ____________________________^_________________

  • Fasta :-

    >NCLIV_017470 ATGGCAGGCCGTAGCACGCAAGCGATGTACGATCGCCACATCACCATTTTCTCGCCCGAT GGAAACCTGTACCAAGTTGAGTACGCGATGAAGGCAGTGCGAAACTGCAACTTGACGTGC GTGGCGATGAAGGGCGACGACAGCGCATGCATCGTCGTGCAGAAGAAAGTCGCGGCGCAG CAGTTGACGCAAGACAAGCACCTCGACAGCTCCTTCGTCTCCTCACTGTACACACTCTCC CCGACCATCGGCAGTTGCCTCGTTGGAGTCTTCCCCGACTGCCGCAGCATCGCTTTCCGC GCACGACAGGAAGCAGGAGAGTTTGCGTACAAGAACGGCTACGACATGCCTGTCTACGCC CTCGCGAAGCGAATCGCCGATATCAACCAGGTGTACACGCAGTTCGCGTACATGCGTCTC CACGCATGCACTGGTATCATGATATCCTATGACGAAGAAGCTGGTCCCTCCATCTACAAA TTCGACCCCGCAGGCTTCTTTGCCGGCTACAAGGCAAGTCGGAATCTTTTCCTACGCGCC ACACGCTACACGACCTCCGGTTCTCCTCATTCCACATTAGGTCTTTGCCGATCCCAGGTC CTCGTTTCGTACGCGAAGGAGAGGAAGGCGGGGATGACCGAGGCTTGTGCATCGGGCACG AAAGAGCAGGAGGCGACAAACATTCTGGAAAAGATGGTAAAGAAGCGCCCGCGCACAACC CCGAAGGAGGTGATTGAGTGCGCCATATCGGCAATGCAGCATGTCCTCGCCATGGACTTC AAAGCCTCCGACATCGAAGTCGGTGTCGTCACGAAAGACCATCCTGCCTTCAGGATTTTG TCGGAGCAGGAAGTCGAGGACCATTTGACGTCGATCGCTGAGAGGGAGTAG
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  • Fasta :-

    MAGRSTQAMYDRHITIFSPDGNLYQVEYAMKAVRNCNLTCVAMKGDDSACIVVQKKVAAQ QLTQDKHLDSSFVSSLYTLSPTIGSCLVGVFPDCRSIAFRARQEAGEFAYKNGYDMPVYA LAKRIADINQVYTQFAYMRLHACTGIMISYDEEAGPSIYKFDPAGFFAGYKASRNLFLRA TRYTTSGSPHSTLGLCRSQVLVSYAKERKAGMTEACASGTKEQEATNILEKMVKKRPRTT PKEVIECAISAMQHVLAMDFKASDIEVGVVTKDHPAFRILSEQEVEDHLTSIAERE

  • title: active site
  • coordinates: L38,Q54,K56,S75,T220
No Results
No Results
IDSitePeptideScoreMethod
NCLIV_017470240 TRPRTTPKEV0.998unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India