NCLIV_019480 | proteasome A-type and B-type domain-containing protein

_IDPredictionOTHERSPmTPCS_Position
NCLIV_019480OTHER0.9995660.0003110.000123
No Results

  • Fasta :-

    >NCLIV_019480 MASLPSPLDLQAMAATQENTLTGLAPRDTTVPIVTTSSVLGITYKDGILMVADTLASYGR MTRFKDTSRFFTLGTHTAVASTGDYSDHQMLERTLSRYALKDFLHDDNSVRTAHQYGALL SRLMYQKRSRMNPWWLSVIVGGYQGERTETREVSDKCAKPFVLGYVDMYGTFYEEDVIAT GLGRYFAITLMRNRHRPDMSEDEARQLLEECMRLLFYRDCGASNRIQFTKITTSGVTVEE PYVIDSKWDYEHYVKKTMDMGLAGCAW
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NCLIV_019480.fa Sequence name : NCLIV_019480 Sequence length : 267 VALUES OF COMPUTED PARAMETERS Coef20 : 3.806 CoefTot : 0.103 ChDiff : -3 ZoneTo : 8 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.900 1.065 0.064 0.434 MesoH : -0.363 0.174 -0.316 0.142 MuHd_075 : 10.614 5.713 2.210 1.339 MuHd_095 : 11.005 7.995 3.169 2.194 MuHd_100 : 7.117 7.354 2.112 2.268 MuHd_105 : 2.399 4.028 1.229 1.622 Hmax_075 : 11.433 8.050 0.844 3.407 Hmax_095 : 13.200 10.800 1.382 4.150 Hmax_100 : 13.200 10.800 1.382 4.150 Hmax_105 : 5.250 6.000 -1.016 2.820 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9877 0.0123 DFMC : 0.9702 0.0298
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 267 NCLIV_019480 MASLPSPLDLQAMAATQENTLTGLAPRDTTVPIVTTSSVLGITYKDGILMVADTLASYGRMTRFKDTSRFFTLGTHTAVA 80 STGDYSDHQMLERTLSRYALKDFLHDDNSVRTAHQYGALLSRLMYQKRSRMNPWWLSVIVGGYQGERTETREVSDKCAKP 160 FVLGYVDMYGTFYEEDVIATGLGRYFAITLMRNRHRPDMSEDEARQLLEECMRLLFYRDCGASNRIQFTKITTSGVTVEE 240 PYVIDSKWDYEHYVKKTMDMGLAGCAW 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ........................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ NCLIV_019480 27 LTGLAPR|DT 0.107 . NCLIV_019480 45 VLGITYK|DG 0.067 . NCLIV_019480 60 TLASYGR|MT 0.106 . NCLIV_019480 63 SYGRMTR|FK 0.402 . NCLIV_019480 65 GRMTRFK|DT 0.114 . NCLIV_019480 69 RFKDTSR|FF 0.100 . NCLIV_019480 93 DHQMLER|TL 0.079 . NCLIV_019480 97 LERTLSR|YA 0.101 . NCLIV_019480 101 LSRYALK|DF 0.078 . NCLIV_019480 111 HDDNSVR|TA 0.123 . NCLIV_019480 122 YGALLSR|LM 0.084 . NCLIV_019480 127 SRLMYQK|RS 0.062 . NCLIV_019480 128 RLMYQKR|SR 0.230 . NCLIV_019480 130 MYQKRSR|MN 0.096 . NCLIV_019480 147 GGYQGER|TE 0.070 . NCLIV_019480 151 GERTETR|EV 0.161 . NCLIV_019480 156 TREVSDK|CA 0.083 . NCLIV_019480 159 VSDKCAK|PF 0.060 . NCLIV_019480 184 IATGLGR|YF 0.081 . NCLIV_019480 192 FAITLMR|NR 0.076 . NCLIV_019480 194 ITLMRNR|HR 0.070 . NCLIV_019480 196 LMRNRHR|PD 0.092 . NCLIV_019480 205 MSEDEAR|QL 0.102 . NCLIV_019480 213 LLEECMR|LL 0.080 . NCLIV_019480 218 MRLLFYR|DC 0.194 . NCLIV_019480 225 DCGASNR|IQ 0.095 . NCLIV_019480 230 NRIQFTK|IT 0.085 . NCLIV_019480 247 PYVIDSK|WD 0.056 . NCLIV_019480 255 DYEHYVK|KT 0.061 . NCLIV_019480 256 YEHYVKK|TM 0.157 . ____________________________^_________________

  • Fasta :-

    >NCLIV_019480 ATGGCGTCGCTGCCGTCTCCTCTCGACCTCCAGGCCATGGCGGCGACTCAGGAGAACACT CTCACGGGTCTCGCCCCGCGAGACACTACTGTCCCCATCGTCACAACTTCCTCAGTCCTC GGCATCACCTACAAAGACGGCATTCTCATGGTGGCCGATACGCTCGCCTCCTACGGCCGG ATGACGCGCTTCAAGGACACGTCCCGGTTCTTTACTCTGGGGACGCACACGGCTGTGGCG TCTACCGGCGACTACTCGGACCACCAAATGCTCGAAAGGACGCTCTCGCGGTATGCCTTG AAAGACTTTCTGCACGACGACAACTCTGTCAGGACTGCCCACCAGTACGGGGCGCTACTC TCGCGTCTCATGTACCAGAAACGCAGTCGAATGAACCCCTGGTGGCTGAGCGTCATCGTG GGCGGGTATCAGGGCGAGAGGACAGAGACTCGCGAGGTCTCAGACAAATGCGCGAAACCT TTCGTTCTCGGATACGTCGACATGTACGGCACATTCTACGAAGAAGACGTCATCGCCACA GGCCTCGGGCGCTACTTCGCCATCACCCTCATGAGGAACCGCCATCGCCCAGACATGTCT GAGGACGAGGCAAGGCAGCTGCTTGAGGAGTGCATGCGGCTTCTCTTCTACCGCGACTGC GGAGCATCGAACCGCATCCAGTTCACCAAGATCACCACCTCGGGCGTCACCGTGGAAGAG CCCTACGTCATCGACAGCAAATGGGATTACGAGCACTACGTGAAGAAGACGATGGACATG GGTCTGGCGGGGTGCGCGTGGTGA
  • Download Fasta

  • Fasta :-

    MASLPSPLDLQAMAATQENTLTGLAPRDTTVPIVTTSSVLGITYKDGILMVADTLASYGR MTRFKDTSRFFTLGTHTAVASTGDYSDHQMLERTLSRYALKDFLHDDNSVRTAHQYGALL SRLMYQKRSRMNPWWLSVIVGGYQGERTETREVSDKCAKPFVLGYVDMYGTFYEEDVIAT GLGRYFAITLMRNRHRPDMSEDEARQLLEECMRLLFYRDCGASNRIQFTKITTSGVTVEE PYVIDSKWDYEHYVKKTMDMGLAGCAW

  • title: active site
  • coordinates: S37,D53,L55,R69,L182,D219,A222,S223
No Results
No Results
IDSitePeptideScoreMethod
NCLIV_019480154 STREVSDKCA0.997unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India