NCLIV_024640 | Rhomboid family protein, related

  • Computed_GO_Component_IDs:  GO:0016021      

  • Computed_GO_Components:  integral component of membrane      

  • Computed_GO_Function_IDs:  GO:0004252      

  • Computed_GO_Functions:  serine-type endopeptidase activity      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
NCLIV_024640OTHER0.9999210.0000040.000075
No Results

  • Fasta :-

    >NCLIV_024640 MANIRTLSDYASAPARDSSAHEAGGRQGGSSLPLFFSSGTESGENVNWIQWLCPGIHLKS PIVIISLVQVAVYIASLALGLAPNEVLAPTPQTLAMFGANIPELIRIGQVWRLICPLFLH LNLFHILMNLWVQSRVGLTMEEKYGSKKLLATYFGVGILANMISAAVLFCGQMKAGASTA VFALIGVQLAELALIWHALQDRNSAILSVCICLFFVFVSSFGGHTDGIGHLGGLVMGFAA GIWLNENSDVKPTWYDRGLVTSKVALAIAPIVSSIFIFLVPRC
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NCLIV_024640.fa Sequence name : NCLIV_024640 Sequence length : 283 VALUES OF COMPUTED PARAMETERS Coef20 : 4.439 CoefTot : 0.376 ChDiff : 1 ZoneTo : 8 KR : 1 DE : 0 CleavSite : 15 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.459 2.706 0.622 0.889 MesoH : 0.954 1.393 0.068 0.527 MuHd_075 : 3.361 3.569 0.491 0.717 MuHd_095 : 32.620 14.586 7.286 6.217 MuHd_100 : 33.579 16.346 7.575 6.805 MuHd_105 : 29.603 15.704 6.706 6.546 Hmax_075 : -4.083 -0.175 -2.046 1.027 Hmax_095 : 5.500 6.800 -0.098 2.900 Hmax_100 : 13.700 12.200 2.026 4.020 Hmax_105 : 11.900 9.275 1.378 3.622 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.7865 0.2135 DFMC : 0.8455 0.1545
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 283 NCLIV_024640 MANIRTLSDYASAPARDSSAHEAGGRQGGSSLPLFFSSGTESGENVNWIQWLCPGIHLKSPIVIISLVQVAVYIASLALG 80 LAPNEVLAPTPQTLAMFGANIPELIRIGQVWRLICPLFLHLNLFHILMNLWVQSRVGLTMEEKYGSKKLLATYFGVGILA 160 NMISAAVLFCGQMKAGASTAVFALIGVQLAELALIWHALQDRNSAILSVCICLFFVFVSSFGGHTDGIGHLGGLVMGFAA 240 GIWLNENSDVKPTWYDRGLVTSKVALAIAPIVSSIFIFLVPRC 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ........................................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ NCLIV_024640 5 --MANIR|TL 0.098 . NCLIV_024640 16 YASAPAR|DS 0.256 . NCLIV_024640 26 AHEAGGR|QG 0.096 . NCLIV_024640 59 CPGIHLK|SP 0.087 . NCLIV_024640 106 NIPELIR|IG 0.062 . NCLIV_024640 112 RIGQVWR|LI 0.103 . NCLIV_024640 135 NLWVQSR|VG 0.074 . NCLIV_024640 143 GLTMEEK|YG 0.070 . NCLIV_024640 147 EEKYGSK|KL 0.057 . NCLIV_024640 148 EKYGSKK|LL 0.107 . NCLIV_024640 174 LFCGQMK|AG 0.058 . NCLIV_024640 202 WHALQDR|NS 0.074 . NCLIV_024640 251 NENSDVK|PT 0.062 . NCLIV_024640 257 KPTWYDR|GL 0.094 . NCLIV_024640 263 RGLVTSK|VA 0.062 . NCLIV_024640 282 FIFLVPR|C- 0.085 . ____________________________^_________________

  • Fasta :-

    >NCLIV_024640 ATGGCCAACATTCGGACGCTGTCAGATTATGCGTCGGCGCCTGCACGGGACTCTTCTGCA CATGAAGCTGGAGGAAGACAGGGAGGAAGTTCGTTGCCACTCTTCTTCTCCTCTGGAACG GAATCTGGTGAAAACGTGAACTGGATTCAATGGCTATGCCCGGGAATACACCTAAAGAGC CCAATCGTCATCATCTCTCTCGTCCAAGTTGCAGTCTACATCGCTTCTCTTGCCTTAGGG CTGGCGCCCAATGAAGTCCTGGCTCCAACTCCACAAACGCTGGCGATGTTTGGCGCGAAC ATTCCCGAGCTCATTCGCATTGGCCAGGTGTGGAGGCTCATTTGTCCTCTCTTTCTTCAT CTGAACCTCTTTCACATCTTGATGAATCTCTGGGTGCAAAGCCGGGTCGGGCTGACGATG GAGGAAAAGTATGGATCGAAGAAATTGCTTGCGACTTACTTTGGAGTCGGAATTCTCGCC AACATGATCTCCGCAGCGGTCCTGTTTTGCGGCCAGATGAAAGCAGGAGCATCGACCGCC GTCTTTGCCCTCATTGGCGTACAGCTCGCCGAGCTCGCGCTTATCTGGCATGCACTCCAA GATCGGAACAGCGCCATCCTTAGCGTTTGCATCTGCCTGTTCTTCGTCTTCGTCTCCTCC TTTGGAGGCCACACGGACGGAATTGGCCATCTCGGCGGGCTGGTGATGGGGTTTGCCGCG GGAATCTGGTTGAACGAAAACAGCGATGTCAAGCCGACGTGGTACGACAGGGGTCTGGTC ACATCGAAGGTCGCGCTGGCTATTGCGCCGATTGTGAGCTCGATCTTCATCTTCCTCGTT CCCCGCTGCTAA
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  • Fasta :-

    MANIRTLSDYASAPARDSSAHEAGGRQGGSSLPLFFSSGTESGENVNWIQWLCPGIHLKS PIVIISLVQVAVYIASLALGLAPNEVLAPTPQTLAMFGANIPELIRIGQVWRLICPLFLH LNLFHILMNLWVQSRVGLTMEEKYGSKKLLATYFGVGILANMISAAVLFCGQMKAGASTA VFALIGVQLAELALIWHALQDRNSAILSVCICLFFVFVSSFGGHTDGIGHLGGLVMGFAA GIWLNENSDVKPTWYDRGLVTSKVALAIAPIVSSIFIFLVPRC

    No Results
No Results
No Results
IDSitePeptideScoreMethod
NCLIV_02464019 SARDSSAHEA0.994unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India