NCLIV_024980 | Pepsinogen A1, related

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:        

  • Computed_GO_Functions:        

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
NCLIV_024980SP0.0022310.9970080.000761CS pos: 19-20. AFA-VR. Pr: 0.9055
No Results

  • Fasta :-

    >NCLIV_024980 MRLLHTIACVAVCCSPAFAVRERSEHKHGGRLAAEETLLQAESTEKSLFREPEFNVVLKN RYQETGLKEFISRLLEHHGALATGKHDVAQKAHQELLNFHNSQYFGEIQVGTPPVPFVVV FDTGSSNLWIPASECKRGCMPHTRFDPKTSSTYLPINAGAGEPAIAFIQYGTGACVLRMA KDTVFIGGITVQNQTLGLALQESTHPFADLPFDGLVGLGFPDVTGEEGLPADALPLVDLM MKQKLLKRNVFAVYMSEQLNQPGEITFGSVNPRYTFEGHKPQWFPVISLDYWEVGIHGLR LNGKSLRICERKRCKAAVDTGSSLITGPSEVINPLLQSLNVAEDCSNKDSLPTVTFVLED TDGRLVKFPLKPSDYLVEEINSQGKSVTCAAGFIPMDVPAPRGPLFVLGNSFIRKYYTIF DRDHMMVGFMRANHDGSGPSLKESSANSDSLFWATVLGIMGFCARATA
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NCLIV_024980.fa Sequence name : NCLIV_024980 Sequence length : 468 VALUES OF COMPUTED PARAMETERS Coef20 : 4.851 CoefTot : 0.698 ChDiff : -6 ZoneTo : 21 KR : 2 DE : 0 CleavSite : 23 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.682 1.888 0.460 0.599 MesoH : 0.053 0.517 -0.206 0.341 MuHd_075 : 17.473 17.641 7.465 4.340 MuHd_095 : 18.357 14.508 3.410 5.482 MuHd_100 : 22.292 18.145 5.977 6.213 MuHd_105 : 23.575 19.908 7.311 6.517 Hmax_075 : 17.400 21.400 7.358 6.330 Hmax_095 : 15.925 18.287 4.343 5.670 Hmax_100 : 18.600 23.400 6.111 6.810 Hmax_105 : 18.200 24.033 7.226 6.545 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.4435 0.5565 DFMC : 0.6058 0.3942
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 468 NCLIV_024980 MRLLHTIACVAVCCSPAFAVRERSEHKHGGRLAAEETLLQAESTEKSLFREPEFNVVLKNRYQETGLKEFISRLLEHHGA 80 LATGKHDVAQKAHQELLNFHNSQYFGEIQVGTPPVPFVVVFDTGSSNLWIPASECKRGCMPHTRFDPKTSSTYLPINAGA 160 GEPAIAFIQYGTGACVLRMAKDTVFIGGITVQNQTLGLALQESTHPFADLPFDGLVGLGFPDVTGEEGLPADALPLVDLM 240 MKQKLLKRNVFAVYMSEQLNQPGEITFGSVNPRYTFEGHKPQWFPVISLDYWEVGIHGLRLNGKSLRICERKRCKAAVDT 320 GSSLITGPSEVINPLLQSLNVAEDCSNKDSLPTVTFVLEDTDGRLVKFPLKPSDYLVEEINSQGKSVTCAAGFIPMDVPA 400 PRGPLFVLGNSFIRKYYTIFDRDHMMVGFMRANHDGSGPSLKESSANSDSLFWATVLGIMGFCARATA 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 .................................................................... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ NCLIV_024980 2 -----MR|LL 0.104 . NCLIV_024980 21 SPAFAVR|ER 0.109 . NCLIV_024980 23 AFAVRER|SE 0.165 . NCLIV_024980 27 RERSEHK|HG 0.069 . NCLIV_024980 31 EHKHGGR|LA 0.085 . NCLIV_024980 46 QAESTEK|SL 0.074 . NCLIV_024980 50 TEKSLFR|EP 0.087 . NCLIV_024980 59 EFNVVLK|NR 0.067 . NCLIV_024980 61 NVVLKNR|YQ 0.159 . NCLIV_024980 68 YQETGLK|EF 0.054 . NCLIV_024980 73 LKEFISR|LL 0.101 . NCLIV_024980 85 GALATGK|HD 0.066 . NCLIV_024980 91 KHDVAQK|AH 0.062 . NCLIV_024980 136 IPASECK|RG 0.058 . NCLIV_024980 137 PASECKR|GC 0.214 . NCLIV_024980 144 GCMPHTR|FD 0.099 . NCLIV_024980 148 HTRFDPK|TS 0.089 . NCLIV_024980 178 TGACVLR|MA 0.137 . NCLIV_024980 181 CVLRMAK|DT 0.128 . NCLIV_024980 242 LVDLMMK|QK 0.057 . NCLIV_024980 244 DLMMKQK|LL 0.066 . NCLIV_024980 247 MKQKLLK|RN 0.062 . NCLIV_024980 248 KQKLLKR|NV 0.287 . NCLIV_024980 273 FGSVNPR|YT 0.144 . NCLIV_024980 280 YTFEGHK|PQ 0.053 . NCLIV_024980 300 VGIHGLR|LN 0.087 . NCLIV_024980 304 GLRLNGK|SL 0.098 . NCLIV_024980 307 LNGKSLR|IC 0.103 . NCLIV_024980 311 SLRICER|KR 0.089 . NCLIV_024980 312 LRICERK|RC 0.103 . NCLIV_024980 313 RICERKR|CK 0.181 . NCLIV_024980 315 CERKRCK|AA 0.077 . NCLIV_024980 348 AEDCSNK|DS 0.061 . NCLIV_024980 364 LEDTDGR|LV 0.077 . NCLIV_024980 367 TDGRLVK|FP 0.120 . NCLIV_024980 371 LVKFPLK|PS 0.059 . NCLIV_024980 385 EINSQGK|SV 0.109 . NCLIV_024980 402 MDVPAPR|GP 0.096 . NCLIV_024980 414 LGNSFIR|KY 0.093 . NCLIV_024980 415 GNSFIRK|YY 0.118 . NCLIV_024980 422 YYTIFDR|DH 0.107 . NCLIV_024980 431 MMVGFMR|AN 0.112 . NCLIV_024980 442 GSGPSLK|ES 0.079 . NCLIV_024980 465 IMGFCAR|AT 0.101 . ____________________________^_________________

  • Fasta :-

    >NCLIV_024980 ATGAGGCTGCTTCACACTATTGCCTGTGTGGCTGTCTGCTGCAGCCCAGCGTTCGCGGTA CGGGAGCGGTCGGAACACAAGCATGGTGGGCGTTTGGCAGCAGAAGAAACCCTCCTGCAA GCGGAGTCCACAGAGAAGTCTCTTTTCCGCGAACCGGAATTCAACGTTGTGTTGAAAAAT CGTTACCAAGAAACCGGCCTTAAAGAGTTTATATCTCGTCTTCTCGAACACCATGGAGCA CTGGCGACCGGAAAACACGATGTCGCCCAAAAGGCCCACCAGGAGCTACTCAACTTCCAT AACAGTCAGTACTTCGGAGAAATTCAAGTTGGAACGCCTCCTGTGCCGTTTGTTGTGGTA TTTGATACCGGATCCTCAAACCTCTGGATACCGGCATCTGAATGCAAACGCGGTTGTATG CCGCATACCCGCTTTGACCCCAAAACTTCCTCCACTTACCTCCCGATAAACGCGGGTGCT GGTGAGCCAGCGATCGCGTTCATCCAGTATGGGACAGGTGCATGTGTTCTTCGGATGGCG AAAGACACGGTGTTCATCGGAGGAATAACAGTGCAAAATCAAACTCTTGGCTTAGCCCTT CAAGAGTCCACGCATCCGTTCGCTGATCTACCGTTCGACGGCCTTGTTGGCCTCGGTTTT CCTGATGTCACAGGAGAAGAAGGACTGCCGGCGGACGCTCTCCCCCTCGTCGACTTAATG ATGAAGCAAAAACTGCTTAAAAGGAATGTGTTCGCCGTGTATATGAGTGAACAATTGAAT CAGCCTGGGGAGATCACGTTCGGTTCCGTAAACCCTCGATATACGTTCGAAGGTCACAAG CCTCAGTGGTTCCCCGTGATATCTTTGGATTACTGGGAAGTTGGAATTCACGGTCTTCGC CTCAACGGCAAGTCTCTACGCATCTGCGAACGCAAGCGGTGCAAAGCCGCTGTCGACACC GGTTCGAGTTTGATCACCGGACCCTCTGAAGTCATCAACCCTCTCCTACAATCGCTAAAC GTGGCTGAAGACTGTTCGAACAAAGATAGCCTCCCAACGGTCACTTTTGTTCTGGAGGAC ACTGATGGACGCCTCGTTAAGTTCCCACTAAAACCATCTGACTATCTCGTCGAGGAAATC AACTCCCAAGGAAAATCGGTCACTTGTGCTGCTGGCTTCATACCAATGGATGTTCCTGCT CCTCGTGGTCCTCTCTTCGTTCTTGGGAATTCGTTTATAAGGAAATACTACACCATTTTT GATCGGGATCATATGATGGTTGGATTCATGAGAGCCAACCACGACGGGAGCGGCCCATCA CTGAAGGAGTCATCCGCGAACTCAGACAGCCTTTTCTGGGCAACAGTGCTCGGCATTATG GGTTTCTGTGCCAGAGCTACTGCATGA
  • Download Fasta

  • Fasta :-

    MRLLHTIACVAVCCSPAFAVRERSEHKHGGRLAAEETLLQAESTEKSLFREPEFNVVLKN RYQETGLKEFISRLLEHHGALATGKHDVAQKAHQELLNFHNSQYFGEIQVGTPPVPFVVV FDTGSSNLWIPASECKRGCMPHTRFDPKTSSTYLPINAGAGEPAIAFIQYGTGACVLRMA KDTVFIGGITVQNQTLGLALQESTHPFADLPFDGLVGLGFPDVTGEEGLPADALPLVDLM MKQKLLKRNVFAVYMSEQLNQPGEITFGSVNPRYTFEGHKPQWFPVISLDYWEVGIHGLR LNGKSLRICERKRCKAAVDTGSSLITGPSEVINPLLQSLNVAEDCSNKDSLPTVTFVLED TDGRLVKFPLKPSDYLVEEINSQGKSVTCAAGFIPMDVPAPRGPLFVLGNSFIRKYYTIF DRDHMMVGFMRANHDGSGPSLKESSANSDSLFWATVLGIMGFCARATA

  • title: inhibitor binding site
  • coordinates: D122,G124,S126,F167,I168,Q169,L215
No Results
No Results
IDSitePeptideScoreMethod
NCLIV_024980440 SGSGPSLKES0.996unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India