NCLIV_025340 | hypothetical protein

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_IDPredictionOTHERSPmTPCS_Position
NCLIV_025340OTHER0.9988430.0002200.000937
No Results

  • Fasta :-

    >NCLIV_025340 MGNALKRMVFQPPSQPTYECDSRFIWLTTRRRQRIPAFFIDIGANLTVIFSHGNAEDIGM VIEYFKEVACLWNCNFFVYDYVGYGHSSGKPSEQGVYDSIEAAFDYLTQQLGMPAASIVA YGRSLGTGASCHLACKHKLAGMILQSGLTSIHRVGLNTRFSLPGDMFCNIDKIGKVECPV FIIHGTKDEIVPVHHGMELYNRCPVSVTPYWVEGGGHNNLELLGRRAFYENVARFLKFIR ARSTQLELRSPNTLCSSASLSAR
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NCLIV_025340.fa Sequence name : NCLIV_025340 Sequence length : 263 VALUES OF COMPUTED PARAMETERS Coef20 : 3.387 CoefTot : -1.213 ChDiff : 4 ZoneTo : 18 KR : 2 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.218 1.618 0.133 0.666 MesoH : -0.130 0.435 -0.231 0.293 MuHd_075 : 25.098 19.844 7.471 5.903 MuHd_095 : 32.095 20.025 8.385 7.236 MuHd_100 : 24.365 15.007 6.201 5.909 MuHd_105 : 16.601 9.418 3.828 4.343 Hmax_075 : 12.367 12.250 1.789 4.783 Hmax_095 : 13.400 10.400 0.981 4.340 Hmax_100 : 12.800 8.200 0.874 4.200 Hmax_105 : 8.900 6.300 -0.489 3.230 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.7115 0.2885 DFMC : 0.8387 0.1613
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 263 NCLIV_025340 MGNALKRMVFQPPSQPTYECDSRFIWLTTRRRQRIPAFFIDIGANLTVIFSHGNAEDIGMVIEYFKEVACLWNCNFFVYD 80 YVGYGHSSGKPSEQGVYDSIEAAFDYLTQQLGMPAASIVAYGRSLGTGASCHLACKHKLAGMILQSGLTSIHRVGLNTRF 160 SLPGDMFCNIDKIGKVECPVFIIHGTKDEIVPVHHGMELYNRCPVSVTPYWVEGGGHNNLELLGRRAFYENVARFLKFIR 240 ARSTQLELRSPNTLCSSASLSAR 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ....................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ NCLIV_025340 6 -MGNALK|RM 0.054 . NCLIV_025340 7 MGNALKR|MV 0.351 . NCLIV_025340 23 TYECDSR|FI 0.085 . NCLIV_025340 30 FIWLTTR|RR 0.068 . NCLIV_025340 31 IWLTTRR|RQ 0.083 . NCLIV_025340 32 WLTTRRR|QR 0.105 . NCLIV_025340 34 TTRRRQR|IP 0.212 . NCLIV_025340 66 MVIEYFK|EV 0.062 . NCLIV_025340 90 YGHSSGK|PS 0.085 . NCLIV_025340 123 SIVAYGR|SL 0.204 . NCLIV_025340 136 SCHLACK|HK 0.065 . NCLIV_025340 138 HLACKHK|LA 0.104 . NCLIV_025340 153 GLTSIHR|VG 0.065 . NCLIV_025340 159 RVGLNTR|FS 0.092 . NCLIV_025340 172 MFCNIDK|IG 0.059 . NCLIV_025340 175 NIDKIGK|VE 0.058 . NCLIV_025340 187 FIIHGTK|DE 0.066 . NCLIV_025340 202 GMELYNR|CP 0.076 . NCLIV_025340 225 NLELLGR|RA 0.087 . NCLIV_025340 226 LELLGRR|AF 0.093 . NCLIV_025340 234 FYENVAR|FL 0.095 . NCLIV_025340 237 NVARFLK|FI 0.149 . NCLIV_025340 240 RFLKFIR|AR 0.099 . NCLIV_025340 242 LKFIRAR|ST 0.172 . NCLIV_025340 249 STQLELR|SP 0.107 . NCLIV_025340 263 SASLSAR|-- 0.148 . ____________________________^_________________

  • Fasta :-

    >NCLIV_025340 ATGGGGAACGCTCTGAAGCGGATGGTCTTCCAGCCTCCGTCCCAACCGACGTACGAGTGC GACTCGAGGTTTATCTGGCTCACCACTCGAAGACGCCAGCGAATCCCGGCCTTTTTCATC GACATAGGGGCAAATCTCACAGTCATTTTCAGCCACGGGAATGCCGAAGATATCGGCATG GTCATTGAGTACTTCAAGGAGGTCGCCTGTCTATGGAACTGCAACTTTTTCGTCTACGAC TATGTCGGCTACGGGCACAGCTCAGGGAAGCCCTCTGAGCAGGGCGTTTATGACTCCATC GAAGCAGCGTTTGATTATCTGACCCAGCAGCTTGGCATGCCGGCTGCATCAATCGTCGCT TATGGCCGATCTCTCGGCACAGGCGCTTCCTGTCATCTGGCGTGTAAACATAAGCTTGCG GGAATGATTCTCCAGAGCGGGCTGACCTCCATCCACCGTGTGGGGCTGAACACCCGCTTC TCGCTTCCAGGAGACATGTTCTGCAACATTGACAAAATCGGCAAAGTCGAGTGCCCCGTC TTCATCATCCACGGAACCAAAGACGAAATCGTGCCCGTCCACCACGGAATGGAACTGTAC AATAGATGTCCCGTGAGTGTGACTCCGTACTGGGTGGAAGGCGGCGGCCACAACAACTTG GAGCTTCTGGGCCGGCGAGCGTTCTACGAGAATGTCGCGCGCTTCCTCAAATTCATTCGG GCCCGAAGTACCCAGCTAGAACTTCGTTCTCCAAATACCCTCTGTTCCTCGGCGAGTCTC AGTGCGCGATAA
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  • Fasta :-

    MGNALKRMVFQPPSQPTYECDSRFIWLTTRRRQRIPAFFIDIGANLTVIFSHGNAEDIGM VIEYFKEVACLWNCNFFVYDYVGYGHSSGKPSEQGVYDSIEAAFDYLTQQLGMPAASIVA YGRSLGTGASCHLACKHKLAGMILQSGLTSIHRVGLNTRFSLPGDMFCNIDKIGKVECPV FIIHGTKDEIVPVHHGMELYNRCPVSVTPYWVEGGGHNNLELLGRRAFYENVARFLKFIR ARSTQLELRSPNTLCSSASLSAR

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Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India