NCLIV_026270 | 26S proteasome regulatory subunit S4 like AAA ATpase, related

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0005524      

  • Computed_GO_Functions:  ATP binding      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
NCLIV_026270OTHER0.9964020.0001350.003464
No Results

  • Fasta :-

    >NCLIV_026270 MSALAGPLCPPVAMNGAEGPSSGLRHYYEQKIDGLQRVINEKSQDKRRLEAQRNELNAKV RELRDELQVLLEPGSYVGEVVKVMGRNKVLVKVNPEGKYVVDVAKNIDLSQCTVNTRVAL LNDSYRLHKILPTKIDPLVSLMKVEKVPESTYEMGVLLYGPPGTGKTLLARAVAHHTDCT FIRVSGGELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSQRTEGEHGDSEVQR TMMELLNQLDGFESTQNIKVIMCTNRIDILDDALLRPGRIDRKIEFPNPNVDARTEILKI HSRKMNLMRGIDMRKIAQEMNGSSGAEVKAVCTEAGMFALRERRMFVTQEDFEMAVAKVM KKDAEKNMSLRKLWK
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NCLIV_026270.fa Sequence name : NCLIV_026270 Sequence length : 375 VALUES OF COMPUTED PARAMETERS Coef20 : 3.098 CoefTot : -0.473 ChDiff : 4 ZoneTo : 17 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.212 0.906 0.116 0.454 MesoH : -0.775 0.199 -0.414 0.160 MuHd_075 : 3.330 13.699 2.370 2.197 MuHd_095 : 18.642 17.913 7.203 3.506 MuHd_100 : 13.602 11.144 6.304 1.785 MuHd_105 : 8.309 3.359 4.998 0.573 Hmax_075 : 10.600 13.700 1.575 4.420 Hmax_095 : 16.200 17.600 4.336 5.330 Hmax_100 : 14.000 13.000 3.594 4.260 Hmax_105 : 10.500 9.900 3.494 3.757 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9443 0.0557 DFMC : 0.9239 0.0761
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 375 NCLIV_026270 MSALAGPLCPPVAMNGAEGPSSGLRHYYEQKIDGLQRVINEKSQDKRRLEAQRNELNAKVRELRDELQVLLEPGSYVGEV 80 VKVMGRNKVLVKVNPEGKYVVDVAKNIDLSQCTVNTRVALLNDSYRLHKILPTKIDPLVSLMKVEKVPESTYEMGVLLYG 160 PPGTGKTLLARAVAHHTDCTFIRVSGGELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSQRTEGEHGDSEVQR 240 TMMELLNQLDGFESTQNIKVIMCTNRIDILDDALLRPGRIDRKIEFPNPNVDARTEILKIHSRKMNLMRGIDMRKIAQEM 320 NGSSGAEVKAVCTEAGMFALRERRMFVTQEDFEMAVAKVMKKDAEKNMSLRKLWK 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ....................................................... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ NCLIV_026270 25 GPSSGLR|HY 0.104 . NCLIV_026270 31 RHYYEQK|ID 0.068 . NCLIV_026270 37 KIDGLQR|VI 0.080 . NCLIV_026270 42 QRVINEK|SQ 0.082 . NCLIV_026270 46 NEKSQDK|RR 0.057 . NCLIV_026270 47 EKSQDKR|RL 0.347 . NCLIV_026270 48 KSQDKRR|LE 0.119 . NCLIV_026270 53 RRLEAQR|NE 0.075 . NCLIV_026270 59 RNELNAK|VR 0.058 . NCLIV_026270 61 ELNAKVR|EL 0.139 . NCLIV_026270 64 AKVRELR|DE 0.288 . NCLIV_026270 82 YVGEVVK|VM 0.061 . NCLIV_026270 86 VVKVMGR|NK 0.067 . NCLIV_026270 88 KVMGRNK|VL 0.062 . NCLIV_026270 92 RNKVLVK|VN 0.060 . NCLIV_026270 98 KVNPEGK|YV 0.091 . NCLIV_026270 105 YVVDVAK|NI 0.075 . NCLIV_026270 117 QCTVNTR|VA 0.068 . NCLIV_026270 126 LLNDSYR|LH 0.081 . NCLIV_026270 129 DSYRLHK|IL 0.126 . NCLIV_026270 134 HKILPTK|ID 0.061 . NCLIV_026270 143 PLVSLMK|VE 0.057 . NCLIV_026270 146 SLMKVEK|VP 0.064 . NCLIV_026270 166 GPPGTGK|TL 0.059 . NCLIV_026270 171 GKTLLAR|AV 0.134 . NCLIV_026270 183 TDCTFIR|VS 0.145 . NCLIV_026270 192 GGELVQK|YI 0.094 . NCLIV_026270 199 YIGEGSR|MV 0.115 . NCLIV_026270 202 EGSRMVR|EL 0.260 . NCLIV_026270 209 ELFVMAR|EH 0.090 . NCLIV_026270 228 DSIGSQR|TE 0.111 . NCLIV_026270 240 GDSEVQR|TM 0.152 . NCLIV_026270 259 ESTQNIK|VI 0.055 . NCLIV_026270 266 VIMCTNR|ID 0.071 . NCLIV_026270 276 LDDALLR|PG 0.069 . NCLIV_026270 279 ALLRPGR|ID 0.223 . NCLIV_026270 282 RPGRIDR|KI 0.277 . NCLIV_026270 283 PGRIDRK|IE 0.073 . NCLIV_026270 294 NPNVDAR|TE 0.112 . NCLIV_026270 299 ARTEILK|IH 0.066 . NCLIV_026270 303 ILKIHSR|KM 0.077 . NCLIV_026270 304 LKIHSRK|MN 0.096 . NCLIV_026270 309 RKMNLMR|GI 0.124 . NCLIV_026270 314 MRGIDMR|KI 0.147 . NCLIV_026270 315 RGIDMRK|IA 0.085 . NCLIV_026270 329 SSGAEVK|AV 0.113 . NCLIV_026270 341 AGMFALR|ER 0.077 . NCLIV_026270 343 MFALRER|RM 0.085 . NCLIV_026270 344 FALRERR|MF 0.473 . NCLIV_026270 358 FEMAVAK|VM 0.062 . NCLIV_026270 361 AVAKVMK|KD 0.069 . NCLIV_026270 362 VAKVMKK|DA 0.185 . NCLIV_026270 366 MKKDAEK|NM 0.059 . NCLIV_026270 371 EKNMSLR|KL 0.112 . NCLIV_026270 372 KNMSLRK|LW 0.081 . NCLIV_026270 375 SLRKLWK|-- 0.075 . ____________________________^_________________

  • Fasta :-

    >NCLIV_026270 ATGTCTGCTCTCGCGGGGCCTCTGTGCCCGCCTGTGGCGATGAATGGTGCGGAAGGGCCG AGCTCGGGGCTGCGTCACTACTACGAGCAGAAGATCGATGGTTTGCAGCGCGTCATCAAC GAGAAGTCGCAAGATAAGCGACGTCTCGAGGCTCAGAGAAACGAACTGAATGCAAAAGTT CGTGAGCTGCGCGACGAGCTCCAAGTGTTGCTCGAGCCCGGAAGCTACGTCGGCGAGGTT GTGAAGGTTATGGGCCGGAACAAAGTTCTTGTAAAGGTAAACCCCGAGGGGAAATACGTG GTGGACGTCGCGAAGAACATCGACTTGTCGCAGTGCACTGTGAACACGCGCGTGGCTCTG TTGAACGACAGCTACCGCCTACACAAGATCCTCCCAACCAAAATCGATCCTCTGGTCTCG CTCATGAAAGTCGAGAAGGTGCCGGAGAGCACCTACGAGATGGGCGTGCTGCTCTACGGG CCCCCGGGGACGGGGAAGACGCTGCTGGCCCGAGCGGTTGCTCACCATACAGACTGCACC TTTATTCGCGTCAGCGGCGGCGAACTGGTCCAAAAGTACATCGGCGAGGGGAGTCGCATG GTCCGAGAACTGTTTGTCATGGCGCGAGAGCACGCACCGAGCATCATCTTCATGGACGAA ATCGACAGCATCGGCAGCCAGAGAACCGAGGGCGAGCACGGCGACTCGGAAGTCCAGAGA ACCATGATGGAACTCCTGAACCAACTCGATGGCTTCGAGTCGACACAGAACATCAAGGTG ATCATGTGCACCAACCGAATCGACATCCTCGACGACGCTCTGCTGCGCCCAGGCCGCATC GACCGCAAAATCGAATTCCCGAACCCGAACGTCGATGCACGCACGGAGATTTTGAAGATC CACAGCCGGAAGATGAATCTGATGCGTGGAATTGACATGAGAAAAATTGCGCAAGAAATG AACGGATCGTCGGGTGCAGAGGTCAAAGCTGTGTGCACGGAGGCGGGAATGTTTGCTCTC AGAGAACGCCGCATGTTCGTTACACAGGAAGACTTCGAGATGGCTGTCGCGAAGGTTATG AAGAAGGACGCAGAGAAGAATATGTCTCTTCGCAAATTGTGGAAGTAA
  • Download Fasta

  • Fasta :-

    MSALAGPLCPPVAMNGAEGPSSGLRHYYEQKIDGLQRVINEKSQDKRRLEAQRNELNAKV RELRDELQVLLEPGSYVGEVVKVMGRNKVLVKVNPEGKYVVDVAKNIDLSQCTVNTRVAL LNDSYRLHKILPTKIDPLVSLMKVEKVPESTYEMGVLLYGPPGTGKTLLARAVAHHTDCT FIRVSGGELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSQRTEGEHGDSEVQR TMMELLNQLDGFESTQNIKVIMCTNRIDILDDALLRPGRIDRKIEFPNPNVDARTEILKI HSRKMNLMRGIDMRKIAQEMNGSSGAEVKAVCTEAGMFALRERRMFVTQEDFEMAVAKVM KKDAEKNMSLRKLWK

  • title: ATP binding site
  • coordinates: P161,P162,G163,T164,G165,K166,T167,L168,D219,N265
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
NCLIV_026270150 SKVPESTYEM0.994unspNCLIV_026270185 SFIRVSGGEL0.996unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India