NCLIV_028230 | Proteasome subunit alpha type-7, related

_IDPredictionOTHERSPmTPCS_Position
NCLIV_028230OTHER0.9999650.0000220.000013
No Results

  • Fasta :-

    >NCLIV_028230 MSYDRAITVFSPDGHLLQVEYAMEAVRRGGCAVGVMGKDLVVLAVEKKAAARLQEPRTAR KVVMLDENLCLAFAGLHADARVLINKTRVECQSYRLNTATAPSVDYIAKFIAQVQQKYTH RGGVRPFGLSCLIAGAEHDGSIALYQTEPSGICAKWKAQAMGKNYKTVQEYLEKNYTPDL DEDAAIQLAISALMEVVEAGHRHIEVAVVKKEQFYFLDEDRLEKEAQRVESLKNSEEESK SSGGSS
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NCLIV_028230.fa Sequence name : NCLIV_028230 Sequence length : 246 VALUES OF COMPUTED PARAMETERS Coef20 : 3.580 CoefTot : -0.045 ChDiff : -3 ZoneTo : 3 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.776 1.624 0.157 0.552 MesoH : -0.837 0.376 -0.410 0.131 MuHd_075 : 28.573 14.937 6.543 4.663 MuHd_095 : 12.129 9.750 3.119 2.812 MuHd_100 : 14.109 14.515 5.303 4.707 MuHd_105 : 15.524 17.553 6.307 6.098 Hmax_075 : 12.862 11.025 1.795 4.043 Hmax_095 : 7.000 6.037 0.113 3.526 Hmax_100 : 7.400 12.100 0.248 4.210 Hmax_105 : 3.600 11.600 -0.028 4.480 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9720 0.0280 DFMC : 0.9730 0.0270
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 246 NCLIV_028230 MSYDRAITVFSPDGHLLQVEYAMEAVRRGGCAVGVMGKDLVVLAVEKKAAARLQEPRTARKVVMLDENLCLAFAGLHADA 80 RVLINKTRVECQSYRLNTATAPSVDYIAKFIAQVQQKYTHRGGVRPFGLSCLIAGAEHDGSIALYQTEPSGICAKWKAQA 160 MGKNYKTVQEYLEKNYTPDLDEDAAIQLAISALMEVVEAGHRHIEVAVVKKEQFYFLDEDRLEKEAQRVESLKNSEEESK 240 SSGGSS 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ...... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ NCLIV_028230 5 --MSYDR|AI 0.082 . NCLIV_028230 27 YAMEAVR|RG 0.094 . NCLIV_028230 28 AMEAVRR|GG 0.206 . NCLIV_028230 38 AVGVMGK|DL 0.064 . NCLIV_028230 47 VVLAVEK|KA 0.060 . NCLIV_028230 48 VLAVEKK|AA 0.113 . NCLIV_028230 52 EKKAAAR|LQ 0.084 . NCLIV_028230 57 ARLQEPR|TA 0.126 . NCLIV_028230 60 QEPRTAR|KV 0.302 . NCLIV_028230 61 EPRTARK|VV 0.100 . NCLIV_028230 81 GLHADAR|VL 0.102 . NCLIV_028230 86 ARVLINK|TR 0.058 . NCLIV_028230 88 VLINKTR|VE 0.087 . NCLIV_028230 95 VECQSYR|LN 0.085 . NCLIV_028230 109 SVDYIAK|FI 0.084 . NCLIV_028230 117 IAQVQQK|YT 0.097 . NCLIV_028230 121 QQKYTHR|GG 0.079 . NCLIV_028230 125 THRGGVR|PF 0.091 . NCLIV_028230 155 PSGICAK|WK 0.071 . NCLIV_028230 157 GICAKWK|AQ 0.076 . NCLIV_028230 163 KAQAMGK|NY 0.070 . NCLIV_028230 166 AMGKNYK|TV 0.078 . NCLIV_028230 174 VQEYLEK|NY 0.061 . NCLIV_028230 202 VVEAGHR|HI 0.078 . NCLIV_028230 210 IEVAVVK|KE 0.059 . NCLIV_028230 211 EVAVVKK|EQ 0.099 . NCLIV_028230 221 YFLDEDR|LE 0.071 . NCLIV_028230 224 DEDRLEK|EA 0.122 . NCLIV_028230 228 LEKEAQR|VE 0.071 . NCLIV_028230 233 QRVESLK|NS 0.073 . NCLIV_028230 240 NSEEESK|SS 0.084 . ____________________________^_________________

  • Fasta :-

    >NCLIV_028230 ATGAGTTACGATCGCGCCATCACCGTCTTCTCTCCCGACGGTCACCTTCTTCAGGTCGAA TACGCCATGGAGGCGGTTCGACGAGGAGGTTGTGCAGTTGGGGTCATGGGCAAGGATTTA GTTGTTCTGGCGGTCGAGAAGAAAGCTGCCGCGAGGCTGCAGGAACCTCGGACGGCTCGG AAAGTCGTGATGCTCGACGAGAATCTCTGCCTCGCCTTCGCGGGACTGCATGCAGATGCC CGAGTGCTGATCAACAAGACGCGCGTCGAGTGCCAGTCGTACCGCCTGAACACAGCGACG GCGCCTTCTGTGGACTACATTGCCAAGTTCATTGCCCAAGTGCAGCAAAAATACACACAT CGAGGAGGCGTTCGGCCGTTCGGGCTCAGCTGCCTGATTGCCGGCGCGGAGCACGACGGC TCTATTGCTCTCTACCAGACGGAGCCGTCGGGGATTTGCGCCAAGTGGAAGGCGCAAGCG ATGGGAAAGAACTACAAAACGGTCCAAGAGTACTTGGAGAAGAATTACACCCCGGACCTA GATGAAGACGCCGCCATCCAGCTGGCCATCAGCGCTCTGATGGAAGTTGTGGAGGCAGGC CATCGACACATCGAGGTGGCTGTTGTGAAGAAGGAACAGTTTTACTTCCTCGACGAAGAT CGCCTTGAGAAAGAGGCCCAGCGCGTCGAGTCTCTGAAGAACTCGGAGGAGGAGAGCAAG AGCAGTGGCGGTAGCTCGTAA
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  • Fasta :-

    MSYDRAITVFSPDGHLLQVEYAMEAVRRGGCAVGVMGKDLVVLAVEKKAAARLQEPRTAR KVVMLDENLCLAFAGLHADARVLINKTRVECQSYRLNTATAPSVDYIAKFIAQVQQKYTH RGGVRPFGLSCLIAGAEHDGSIALYQTEPSGICAKWKAQAMGKNYKTVQEYLEKNYTPDL DEDAAIQLAISALMEVVEAGHRHIEVAVVKKEQFYFLDEDRLEKEAQRVESLKNSEEESK SSGGSS

  • title: active site
  • coordinates: G30,E46,K48,K61,K163
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
NCLIV_028230231 SQRVESLKNS0.997unspNCLIV_028230235 SSLKNSEEES0.997unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India