NCLIV_030650 | putative 26S protease regulatory subunit 6b

_IDPredictionOTHERSPmTPCS_Position
NCLIV_030650OTHER0.9999790.0000070.000013
No Results

  • Fasta :-

    >NCLIV_030650 MSSATVLQRPPEASPSSAELAAGESAQHSRDLYAQLKALQKRLEFLNIQEEYIKDEQKNL KREFYRAREELKRIQSVPLVIGQFMELINANEGIVASTAGSSYVVRILSTLNRQERRIEL LKTGCSVALHRHSHSVVDILPPEADSTIQTLQMQEKPDVTYSDIGGMDIQKQEIREAVEL PLTCPELYQQIGIDPPTGVLLYGPPGTGKTMLAKAVANNTTATFIRVVGSEFVQKYLGEG PRMVRDVFRLARENSPAIVFIDEVDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTT TVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQRRLIFQTITAKMNLSDEVDLEDY VSRPEKVSAADIAAICQEAGMQAVRKNRYVILPKDFEKGWKAHVRKHERDFDFYSF
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NCLIV_030650.fa Sequence name : NCLIV_030650 Sequence length : 416 VALUES OF COMPUTED PARAMETERS Coef20 : 3.963 CoefTot : -0.039 ChDiff : -3 ZoneTo : 11 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.806 1.129 0.111 0.486 MesoH : -0.572 0.258 -0.367 0.195 MuHd_075 : 14.145 4.869 2.825 3.134 MuHd_095 : 18.261 9.892 5.391 4.068 MuHd_100 : 20.117 11.009 5.704 4.441 MuHd_105 : 22.552 12.048 5.816 4.578 Hmax_075 : 8.633 2.100 -0.288 2.392 Hmax_095 : 8.050 4.375 0.599 2.468 Hmax_100 : 8.600 5.800 0.803 2.400 Hmax_105 : 10.400 7.700 1.076 3.010 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8339 0.1661 DFMC : 0.8233 0.1767
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 416 NCLIV_030650 MSSATVLQRPPEASPSSAELAAGESAQHSRDLYAQLKALQKRLEFLNIQEEYIKDEQKNLKREFYRAREELKRIQSVPLV 80 IGQFMELINANEGIVASTAGSSYVVRILSTLNRQERRIELLKTGCSVALHRHSHSVVDILPPEADSTIQTLQMQEKPDVT 160 YSDIGGMDIQKQEIREAVELPLTCPELYQQIGIDPPTGVLLYGPPGTGKTMLAKAVANNTTATFIRVVGSEFVQKYLGEG 240 PRMVRDVFRLARENSPAIVFIDEVDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTTVKVIMATNRADTLDPALLR 320 PGRLDRKIEFPLPDRRQRRLIFQTITAKMNLSDEVDLEDYVSRPEKVSAADIAAICQEAGMQAVRKNRYVILPKDFEKGW 400 KAHVRKHERDFDFYSF 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ..................P............................................................. 400 ................ 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ NCLIV_030650 9 SATVLQR|PP 0.103 . NCLIV_030650 30 ESAQHSR|DL 0.203 . NCLIV_030650 37 DLYAQLK|AL 0.066 . NCLIV_030650 41 QLKALQK|RL 0.060 . NCLIV_030650 42 LKALQKR|LE 0.154 . NCLIV_030650 54 IQEEYIK|DE 0.065 . NCLIV_030650 58 YIKDEQK|NL 0.060 . NCLIV_030650 61 DEQKNLK|RE 0.056 . NCLIV_030650 62 EQKNLKR|EF 0.147 . NCLIV_030650 66 LKREFYR|AR 0.108 . NCLIV_030650 68 REFYRAR|EE 0.090 . NCLIV_030650 72 RAREELK|RI 0.065 . NCLIV_030650 73 AREELKR|IQ 0.168 . NCLIV_030650 106 GSSYVVR|IL 0.162 . NCLIV_030650 113 ILSTLNR|QE 0.103 . NCLIV_030650 116 TLNRQER|RI 0.272 . NCLIV_030650 117 LNRQERR|IE 0.107 . NCLIV_030650 122 RRIELLK|TG 0.060 . NCLIV_030650 131 CSVALHR|HS 0.099 . NCLIV_030650 156 TLQMQEK|PD 0.066 . NCLIV_030650 171 GGMDIQK|QE 0.059 . NCLIV_030650 175 IQKQEIR|EA 0.092 . NCLIV_030650 209 GPPGTGK|TM 0.058 . NCLIV_030650 214 GKTMLAK|AV 0.083 . NCLIV_030650 226 TTATFIR|VV 0.196 . NCLIV_030650 235 GSEFVQK|YL 0.120 . NCLIV_030650 242 YLGEGPR|MV 0.154 . NCLIV_030650 245 EGPRMVR|DV 0.294 . NCLIV_030650 249 MVRDVFR|LA 0.117 . NCLIV_030650 252 DVFRLAR|EN 0.269 . NCLIV_030650 270 VDAIATK|RF 0.064 . NCLIV_030650 271 DAIATKR|FD 0.186 . NCLIV_030650 280 AQTGADR|EV 0.095 . NCLIV_030650 284 ADREVQR|IL 0.115 . NCLIV_030650 303 DQTTTVK|VI 0.058 . NCLIV_030650 310 VIMATNR|AD 0.076 . NCLIV_030650 320 LDPALLR|PG 0.069 . NCLIV_030650 323 ALLRPGR|LD 0.217 . NCLIV_030650 326 RPGRLDR|KI 0.309 . NCLIV_030650 327 PGRLDRK|IE 0.069 . NCLIV_030650 335 EFPLPDR|RQ 0.064 . NCLIV_030650 336 FPLPDRR|QR 0.104 . NCLIV_030650 338 LPDRRQR|RL 0.251 . NCLIV_030650 339 PDRRQRR|LI 0.591 *ProP* NCLIV_030650 348 FQTITAK|MN 0.061 . NCLIV_030650 363 LEDYVSR|PE 0.078 . NCLIV_030650 366 YVSRPEK|VS 0.132 . NCLIV_030650 385 AGMQAVR|KN 0.076 . NCLIV_030650 386 GMQAVRK|NR 0.093 . NCLIV_030650 388 QAVRKNR|YV 0.339 . NCLIV_030650 394 RYVILPK|DF 0.083 . NCLIV_030650 398 LPKDFEK|GW 0.077 . NCLIV_030650 401 DFEKGWK|AH 0.055 . NCLIV_030650 405 GWKAHVR|KH 0.111 . NCLIV_030650 406 WKAHVRK|HE 0.107 . NCLIV_030650 409 HVRKHER|DF 0.120 . ____________________________^_________________

  • Fasta :-

    >NCLIV_030650 ATGAGCTCGGCAACCGTGCTCCAGCGCCCTCCAGAGGCGTCTCCGTCCTCCGCGGAGTTG GCGGCAGGCGAATCTGCCCAACACAGTCGCGACCTGTACGCGCAGCTGAAGGCTCTCCAG AAGAGACTCGAATTCCTAAACATCCAGGAAGAATATATCAAAGACGAACAGAAGAACCTG AAGCGAGAATTCTACCGCGCGCGAGAGGAGCTGAAACGCATACAGAGCGTTCCTCTCGTT ATTGGGCAGTTCATGGAACTTATCAACGCCAATGAAGGCATCGTCGCCAGCACTGCCGGA AGCAGCTACGTCGTCCGTATTCTCTCGACCCTCAACAGGCAAGAAAGACGCATAGAGCTC CTCAAGACAGGATGCAGCGTCGCCCTTCACCGCCACTCTCACTCGGTTGTCGACATTCTG CCTCCGGAGGCCGACTCCACGATCCAGACGCTTCAAATGCAAGAAAAACCCGATGTCACG TATTCGGATATCGGAGGCATGGACATCCAGAAGCAAGAAATCCGCGAAGCTGTGGAGCTG CCTTTGACGTGTCCGGAGCTCTACCAGCAAATTGGCATTGACCCGCCCACTGGTGTCCTT CTCTATGGACCTCCAGGAACAGGCAAAACCATGCTAGCCAAGGCTGTGGCCAACAACACA ACTGCGACGTTCATTCGCGTTGTCGGCAGCGAATTCGTGCAAAAATATTTAGGAGAGGGT CCGCGCATGGTTCGCGACGTCTTCAGATTGGCGCGCGAGAATTCCCCTGCGATCGTCTTC ATCGATGAAGTCGACGCCATTGCAACCAAGCGCTTCGATGCTCAGACAGGAGCCGATCGT GAAGTGCAGCGCATCCTTCTGGAGCTTCTCAATCAAATGGACGGCTTCGATCAAACCACT ACAGTCAAGGTGATTATGGCGACAAACCGCGCTGACACTCTGGACCCGGCTCTCCTGCGT CCTGGACGCCTGGACCGAAAAATCGAATTTCCTCTACCGGACAGGCGCCAACGGCGTTTA ATTTTTCAAACGATCACAGCCAAGATGAATCTCTCTGATGAGGTCGATCTCGAAGACTAC GTGTCGAGACCGGAGAAGGTGTCGGCAGCTGATATCGCGGCGATCTGCCAGGAGGCGGGT ATGCAAGCTGTGCGGAAGAACCGATACGTCATTCTGCCGAAGGATTTCGAGAAGGGCTGG AAGGCGCACGTGCGCAAGCACGAACGCGACTTCGACTTTTATAGCTTCTAA
  • Download Fasta

  • Fasta :-

    MSSATVLQRPPEASPSSAELAAGESAQHSRDLYAQLKALQKRLEFLNIQEEYIKDEQKNL KREFYRAREELKRIQSVPLVIGQFMELINANEGIVASTAGSSYVVRILSTLNRQERRIEL LKTGCSVALHRHSHSVVDILPPEADSTIQTLQMQEKPDVTYSDIGGMDIQKQEIREAVEL PLTCPELYQQIGIDPPTGVLLYGPPGTGKTMLAKAVANNTTATFIRVVGSEFVQKYLGEG PRMVRDVFRLARENSPAIVFIDEVDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTT TVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQRRLIFQTITAKMNLSDEVDLEDY VSRPEKVSAADIAAICQEAGMQAVRKNRYVILPKDFEKGWKAHVRKHERDFDFYSF

  • title: ATP binding site
  • coordinates: P204,P205,G206,T207,G208,K209,T210,M211,D262,N309
No Results
No Results
IDSitePeptideScoreMethod
NCLIV_03065014 SPPEASPSSA0.99unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India