NCLIV_035050 | putative heat shock protein hslv

_IDPredictionOTHERSPmTPCS_Position
NCLIV_035050OTHER0.6700460.2292050.100749
No Results

  • Fasta :-

    >NCLIV_035050 MPRHAAARHVSLQGLLSFCPLASGRPHARHALSRGGCSDRTLSIFPLKQFVFQSRRAERA GRAILGAPASFASASSGALLLSSALTSHSARFSPPQSLPSLGGVRPFYSYGGARAGGGAA QGPRFERPNFAASPFVPPRHATTILCVRKGDQVCVAGDGMVSQGQMIVKPNARKIRRLQD GVICGFAGATADCFTLLEKLEAKLEEYPGQLLRSCVELAKQWRTDRYLRHLEVGQQKRSK KHEDLFPELHKDTKDCLASKCVLSSNPRQSRAVLIVADKKMSLEVSGVGDVLESHDGILG VGSGGPYAVAAARALYDIDGLSAHEICKRSMAIAASMCCHTNDRVIFEVLENEAKPGETP QSSRTLTDSRRDSDGSTDQAPP
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NCLIV_035050.fa Sequence name : NCLIV_035050 Sequence length : 382 VALUES OF COMPUTED PARAMETERS Coef20 : 4.070 CoefTot : -1.521 ChDiff : 14 ZoneTo : 150 KR : 19 DE : 3 CleavSite : 141 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.618 1.541 0.366 0.587 MesoH : 0.045 0.483 -0.197 0.230 MuHd_075 : 55.136 27.390 13.445 11.075 MuHd_095 : 37.472 20.025 8.574 9.046 MuHd_100 : 46.628 21.934 10.683 10.470 MuHd_105 : 53.878 27.363 12.871 12.298 Hmax_075 : 12.133 12.017 3.595 3.208 Hmax_095 : 11.500 11.813 2.104 4.960 Hmax_100 : 8.700 12.700 0.515 5.540 Hmax_105 : 10.300 13.000 1.008 4.710 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0116 0.9884 DFMC : 0.0016 0.9984 This protein is probably imported in mitochondria. f(Ser) = 0.1333 f(Arg) = 0.1133 CMi = 0.58309 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 382 NCLIV_035050 MPRHAAARHVSLQGLLSFCPLASGRPHARHALSRGGCSDRTLSIFPLKQFVFQSRRAERAGRAILGAPASFASASSGALL 80 LSSALTSHSARFSPPQSLPSLGGVRPFYSYGGARAGGGAAQGPRFERPNFAASPFVPPRHATTILCVRKGDQVCVAGDGM 160 VSQGQMIVKPNARKIRRLQDGVICGFAGATADCFTLLEKLEAKLEEYPGQLLRSCVELAKQWRTDRYLRHLEVGQQKRSK 240 KHEDLFPELHKDTKDCLASKCVLSSNPRQSRAVLIVADKKMSLEVSGVGDVLESHDGILGVGSGGPYAVAAARALYDIDG 320 LSAHEICKRSMAIAASMCCHTNDRVIFEVLENEAKPGETPQSSRTLTDSRRDSDGSTDQAPP 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 .............................................................. 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ NCLIV_035050 3 ----MPR|HA 0.108 . NCLIV_035050 8 PRHAAAR|HV 0.260 . NCLIV_035050 25 CPLASGR|PH 0.075 . NCLIV_035050 29 SGRPHAR|HA 0.125 . NCLIV_035050 34 ARHALSR|GG 0.110 . NCLIV_035050 40 RGGCSDR|TL 0.090 . NCLIV_035050 48 LSIFPLK|QF 0.059 . NCLIV_035050 55 QFVFQSR|RA 0.124 . NCLIV_035050 56 FVFQSRR|AE 0.138 . NCLIV_035050 59 QSRRAER|AG 0.350 . NCLIV_035050 62 RAERAGR|AI 0.326 . NCLIV_035050 91 LTSHSAR|FS 0.171 . NCLIV_035050 105 PSLGGVR|PF 0.077 . NCLIV_035050 114 YSYGGAR|AG 0.115 . NCLIV_035050 124 GAAQGPR|FE 0.107 . NCLIV_035050 127 QGPRFER|PN 0.215 . NCLIV_035050 139 SPFVPPR|HA 0.177 . NCLIV_035050 148 TTILCVR|KG 0.082 . NCLIV_035050 149 TILCVRK|GD 0.086 . NCLIV_035050 169 QGQMIVK|PN 0.067 . NCLIV_035050 173 IVKPNAR|KI 0.101 . NCLIV_035050 174 VKPNARK|IR 0.067 . NCLIV_035050 176 PNARKIR|RL 0.394 . NCLIV_035050 177 NARKIRR|LQ 0.183 . NCLIV_035050 199 CFTLLEK|LE 0.053 . NCLIV_035050 203 LEKLEAK|LE 0.059 . NCLIV_035050 213 YPGQLLR|SC 0.111 . NCLIV_035050 220 SCVELAK|QW 0.065 . NCLIV_035050 223 ELAKQWR|TD 0.097 . NCLIV_035050 226 KQWRTDR|YL 0.319 . NCLIV_035050 229 RTDRYLR|HL 0.296 . NCLIV_035050 237 LEVGQQK|RS 0.066 . NCLIV_035050 238 EVGQQKR|SK 0.280 . NCLIV_035050 240 GQQKRSK|KH 0.080 . NCLIV_035050 241 QQKRSKK|HE 0.285 . NCLIV_035050 251 LFPELHK|DT 0.079 . NCLIV_035050 254 ELHKDTK|DC 0.071 . NCLIV_035050 260 KDCLASK|CV 0.067 . NCLIV_035050 268 VLSSNPR|QS 0.109 . NCLIV_035050 271 SNPRQSR|AV 0.379 . NCLIV_035050 279 VLIVADK|KM 0.060 . NCLIV_035050 280 LIVADKK|MS 0.081 . NCLIV_035050 313 YAVAAAR|AL 0.109 . NCLIV_035050 328 SAHEICK|RS 0.066 . NCLIV_035050 329 AHEICKR|SM 0.211 . NCLIV_035050 344 CCHTNDR|VI 0.102 . NCLIV_035050 355 VLENEAK|PG 0.063 . NCLIV_035050 364 ETPQSSR|TL 0.098 . NCLIV_035050 370 RTLTDSR|RD 0.084 . NCLIV_035050 371 TLTDSRR|DS 0.301 . ____________________________^_________________

  • Fasta :-

    >NCLIV_035050 ATGCCACGCCACGCCGCCGCGCGTCACGTCTCCCTTCAGGGCCTTCTCTCGTTTTGTCCC CTTGCTTCTGGAAGGCCGCACGCTCGCCACGCGCTCTCTCGCGGCGGCTGCTCAGACAGG ACTCTCTCAATCTTCCCTCTGAAACAGTTCGTCTTCCAGTCCCGGAGAGCTGAGCGCGCG GGGCGCGCGATTCTTGGCGCTCCCGCCTCGTTCGCCTCGGCCTCGTCGGGCGCTCTGCTC CTCTCCTCTGCTCTTACCTCACACTCCGCGCGCTTTTCCCCGCCTCAATCCCTCCCTTCT CTCGGCGGCGTCAGACCGTTCTACTCCTATGGCGGAGCGCGTGCAGGGGGAGGCGCCGCA CAGGGACCTAGATTCGAGAGGCCGAATTTCGCAGCTTCGCCGTTCGTGCCGCCTCGCCAC GCGACGACGATTCTCTGTGTTCGAAAGGGAGACCAAGTGTGCGTCGCCGGAGACGGAATG GTTTCGCAGGGACAGATGATTGTAAAACCAAACGCCAGAAAAATTCGGCGCCTGCAGGAC GGTGTCATTTGCGGTTTTGCTGGCGCCACAGCCGACTGCTTCACCCTTTTGGAGAAACTG GAAGCGAAGCTCGAAGAATACCCTGGCCAGCTGCTGCGGTCGTGCGTGGAACTCGCGAAA CAGTGGCGCACAGATCGCTACTTGCGCCATCTGGAGGTCGGACAGCAAAAACGAAGCAAG AAACATGAAGACCTCTTTCCTGAATTGCACAAAGACACGAAAGACTGCTTAGCATCGAAG TGCGTCCTGTCGAGCAATCCTCGGCAGTCCCGTGCGGTTCTCATCGTAGCAGATAAGAAA ATGTCTTTGGAAGTTAGTGGAGTCGGAGATGTTCTGGAGTCTCACGATGGGATTCTCGGC GTCGGCTCTGGCGGGCCCTACGCAGTTGCCGCTGCCCGAGCTCTGTATGACATCGACGGC CTGAGTGCGCATGAGATCTGCAAGCGCTCCATGGCTATTGCAGCAAGCATGTGCTGCCAT ACGAACGACCGGGTGATTTTTGAGGTTTTGGAAAATGAAGCGAAACCCGGGGAGACGCCT CAGTCCAGTCGTACCTTGACAGACTCCCGCCGGGATTCAGACGGAAGCACCGACCAAGCG CCGCCTTAA
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  • Fasta :-

    MPRHAAARHVSLQGLLSFCPLASGRPHARHALSRGGCSDRTLSIFPLKQFVFQSRRAERA GRAILGAPASFASASSGALLLSSALTSHSARFSPPQSLPSLGGVRPFYSYGGARAGGGAA QGPRFERPNFAASPFVPPRHATTILCVRKGDQVCVAGDGMVSQGQMIVKPNARKIRRLQD GVICGFAGATADCFTLLEKLEAKLEEYPGQLLRSCVELAKQWRTDRYLRHLEVGQQKRSK KHEDLFPELHKDTKDCLASKCVLSSNPRQSRAVLIVADKKMSLEVSGVGDVLESHDGILG VGSGGPYAVAAARALYDIDGLSAHEICKRSMAIAASMCCHTNDRVIFEVLENEAKPGETP QSSRTLTDSRRDSDGSTDQAPP

  • title: active site
  • coordinates: T142,D158,M160,K174,S303
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
NCLIV_035050373 SSRRDSDGST0.998unspNCLIV_035050373 SSRRDSDGST0.998unspNCLIV_035050373 SSRRDSDGST0.998unspNCLIV_035050239 SQQKRSKKHE0.995unspNCLIV_035050369 STLTDSRRDS0.998unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India