NCLIV_037440 | Mitochondrial inner membrane signal peptidase

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_IDPredictionOTHERSPmTPCS_Position
NCLIV_037440mTP0.2604660.0033000.736234CS pos: 20-21. LSR-AK. Pr: 0.1261
No Results

  • Fasta :-

    >NCLIV_037440 MWPQVSRYLRAFPRPTWLSRAKGKGGPPSRSELSRLMQDASSFFYIVSRWTVAVSLCSLC QAYIVWVEQTRGLSMEPTLPADGGLLVVEKISRRIYDSSLFTGHPKLKRGSIVLLVPPDG EGVVCKRIIGLPGDVLEVAREEQQFVGYEPVLVPPGHVWVQGDNGEASLDSRTYGCVSQG SILGTAMFSLWPLRFLPRTPPSMNGTRIIASIDNA
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NCLIV_037440.fa Sequence name : NCLIV_037440 Sequence length : 215 VALUES OF COMPUTED PARAMETERS Coef20 : 4.620 CoefTot : -0.904 ChDiff : 5 ZoneTo : 31 KR : 7 DE : 0 CleavSite : 22 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.518 1.735 0.344 0.566 MesoH : -0.373 0.447 -0.275 0.218 MuHd_075 : 36.417 14.191 6.399 8.848 MuHd_095 : 37.473 16.547 7.327 8.145 MuHd_100 : 42.667 20.281 8.918 9.366 MuHd_105 : 48.396 25.425 11.874 10.638 Hmax_075 : 12.000 4.000 0.323 4.160 Hmax_095 : 15.137 7.525 0.098 5.014 Hmax_100 : 15.400 9.800 0.987 5.060 Hmax_105 : 13.417 9.917 1.692 4.220 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0266 0.9734 DFMC : 0.0582 0.9418 This protein is probably imported in mitochondria. f(Ser) = 0.1290 f(Arg) = 0.1613 CMi = 0.43621 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 215 NCLIV_037440 MWPQVSRYLRAFPRPTWLSRAKGKGGPPSRSELSRLMQDASSFFYIVSRWTVAVSLCSLCQAYIVWVEQTRGLSMEPTLP 80 ADGGLLVVEKISRRIYDSSLFTGHPKLKRGSIVLLVPPDGEGVVCKRIIGLPGDVLEVAREEQQFVGYEPVLVPPGHVWV 160 QGDNGEASLDSRTYGCVSQGSILGTAMFSLWPLRFLPRTPPSMNGTRIIASIDNA 240 ................................................................................ 80 ................................................................................ 160 ....................................................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ NCLIV_037440 7 MWPQVSR|YL 0.096 . NCLIV_037440 10 QVSRYLR|AF 0.223 . NCLIV_037440 14 YLRAFPR|PT 0.099 . NCLIV_037440 20 RPTWLSR|AK 0.148 . NCLIV_037440 22 TWLSRAK|GK 0.074 . NCLIV_037440 24 LSRAKGK|GG 0.086 . NCLIV_037440 30 KGGPPSR|SE 0.106 . NCLIV_037440 35 SRSELSR|LM 0.126 . NCLIV_037440 49 FFYIVSR|WT 0.087 . NCLIV_037440 71 VWVEQTR|GL 0.099 . NCLIV_037440 90 GLLVVEK|IS 0.066 . NCLIV_037440 93 VVEKISR|RI 0.073 . NCLIV_037440 94 VEKISRR|IY 0.163 . NCLIV_037440 106 LFTGHPK|LK 0.062 . NCLIV_037440 108 TGHPKLK|RG 0.076 . NCLIV_037440 109 GHPKLKR|GS 0.158 . NCLIV_037440 126 GEGVVCK|RI 0.077 . NCLIV_037440 127 EGVVCKR|II 0.175 . NCLIV_037440 140 DVLEVAR|EE 0.079 . NCLIV_037440 172 EASLDSR|TY 0.102 . NCLIV_037440 194 FSLWPLR|FL 0.092 . NCLIV_037440 198 PLRFLPR|TP 0.080 . NCLIV_037440 207 PSMNGTR|II 0.096 . ____________________________^_________________

  • Fasta :-

    >NCLIV_037440 ATGTGGCCGCAGGTTTCGCGCTATCTACGGGCTTTCCCACGGCCCACCTGGCTTTCTCGC GCGAAGGGAAAGGGAGGCCCTCCTTCGCGGTCGGAGTTGTCTCGCCTTATGCAGGACGCC TCCAGCTTTTTCTACATTGTTTCTCGCTGGACTGTTGCGGTGTCTCTCTGCTCCCTATGT CAAGCGTACATCGTATGGGTCGAGCAGACTCGCGGCCTGTCGATGGAGCCAACGCTTCCA GCCGACGGCGGTCTCCTCGTCGTGGAGAAAATCAGTCGGCGGATTTACGACAGTTCTCTG TTCACTGGCCACCCAAAGTTAAAACGTGGGAGCATCGTTTTGTTGGTTCCACCAGACGGC GAAGGAGTCGTGTGTAAGCGAATCATCGGCTTGCCAGGCGACGTGCTGGAGGTTGCCAGG GAAGAACAGCAGTTCGTCGGCTACGAACCGGTTCTGGTTCCTCCTGGACACGTGTGGGTC CAGGGCGACAATGGCGAAGCGTCTCTTGATAGTCGCACGTACGGTTGTGTCAGTCAAGGG TCCATCCTCGGGACTGCGATGTTCAGTCTCTGGCCTCTTCGCTTTCTGCCGCGCACGCCT CCATCGATGAACGGAACTCGCATTATCGCGTCCATTGACAACGCTTGA
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  • Fasta :-

    MWPQVSRYLRAFPRPTWLSRAKGKGGPPSRSELSRLMQDASSFFYIVSRWTVAVSLCSLC QAYIVWVEQTRGLSMEPTLPADGGLLVVEKISRRIYDSSLFTGHPKLKRGSIVLLVPPDG EGVVCKRIIGLPGDVLEVAREEQQFVGYEPVLVPPGHVWVQGDNGEASLDSRTYGCVSQG SILGTAMFSLWPLRFLPRTPPSMNGTRIIASIDNA

    No Results
  • title: Catalytic site
  • coordinates: S74,K126
No Results
No Results
IDSitePeptideScoreMethod
NCLIV_03744074 STRGLSMEPT0.994unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India