NCLIV_038140 | hypothetical protein

  • Computed_GO_Component_IDs:  GO:0016021      

  • Computed_GO_Components:  integral component of membrane      

  • Computed_GO_Function_IDs:  GO:0004252      

  • Computed_GO_Functions:  serine-type endopeptidase activity      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
NCLIV_038140OTHER0.9999950.0000010.000005
No Results

  • Fasta :-

    >NCLIV_038140 MARVRTLADLRTEEEADENTPLYNAETGSRDSDSTSSGGTAPRSMPIRFLELLFPHFSLR SVVLPISLVDWILYIVTVCLDTELPLIPASNILVHFGANYPPLIKQGQVWRLLLPVFLHA NFFHVFFNVFFQLRMGFTIERRYGLLKFAILYFASAIYGNLLSATAFFCNTLKVGASTAG FGLIGIQICEMALTWHRMRHRDRMLMNMVSFVLLMILLMFTLNGGSIDQMGHLGGLLCGF LYRHLVQQGLER
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NCLIV_038140.fa Sequence name : NCLIV_038140 Sequence length : 252 VALUES OF COMPUTED PARAMETERS Coef20 : 4.033 CoefTot : 0.674 ChDiff : 2 ZoneTo : 8 KR : 2 DE : 0 CleavSite : 15 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.500 2.512 0.309 0.808 MesoH : 0.525 1.053 -0.085 0.477 MuHd_075 : 24.545 9.445 5.792 2.054 MuHd_095 : 20.991 9.727 5.284 2.539 MuHd_100 : 16.685 5.711 3.584 1.597 MuHd_105 : 6.539 3.699 1.767 0.807 Hmax_075 : -8.488 0.500 -3.434 -0.455 Hmax_095 : -10.100 2.900 -3.396 0.150 Hmax_100 : -10.100 1.000 -3.883 -0.250 Hmax_105 : -13.767 0.350 -5.107 -0.520 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9840 0.0160 DFMC : 0.9122 0.0878
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 252 NCLIV_038140 MARVRTLADLRTEEEADENTPLYNAETGSRDSDSTSSGGTAPRSMPIRFLELLFPHFSLRSVVLPISLVDWILYIVTVCL 80 DTELPLIPASNILVHFGANYPPLIKQGQVWRLLLPVFLHANFFHVFFNVFFQLRMGFTIERRYGLLKFAILYFASAIYGN 160 LLSATAFFCNTLKVGASTAGFGLIGIQICEMALTWHRMRHRDRMLMNMVSFVLLMILLMFTLNGGSIDQMGHLGGLLCGF 240 LYRHLVQQGLER 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ............ 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ NCLIV_038140 3 ----MAR|VR 0.073 . NCLIV_038140 5 --MARVR|TL 0.091 . NCLIV_038140 11 RTLADLR|TE 0.072 . NCLIV_038140 30 NAETGSR|DS 0.082 . NCLIV_038140 43 SGGTAPR|SM 0.108 . NCLIV_038140 48 PRSMPIR|FL 0.190 . NCLIV_038140 60 FPHFSLR|SV 0.173 . NCLIV_038140 105 NYPPLIK|QG 0.052 . NCLIV_038140 111 KQGQVWR|LL 0.095 . NCLIV_038140 134 NVFFQLR|MG 0.092 . NCLIV_038140 141 MGFTIER|RY 0.076 . NCLIV_038140 142 GFTIERR|YG 0.095 . NCLIV_038140 147 RRYGLLK|FA 0.079 . NCLIV_038140 173 FFCNTLK|VG 0.052 . NCLIV_038140 197 MALTWHR|MR 0.074 . NCLIV_038140 199 LTWHRMR|HR 0.120 . NCLIV_038140 201 WHRMRHR|DR 0.099 . NCLIV_038140 203 RMRHRDR|ML 0.135 . NCLIV_038140 243 LCGFLYR|HL 0.102 . NCLIV_038140 252 VQQGLER|-- 0.089 . ____________________________^_________________

  • Fasta :-

    >NCLIV_038140 ATGGCTCGGGTCCGAACGCTAGCAGACCTCCGCACAGAGGAGGAGGCCGACGAGAACACG CCCCTCTACAACGCGGAGACAGGGAGTCGGGACTCTGATTCTACGAGCAGCGGGGGAACG GCGCCACGGTCCATGCCTATTCGTTTCCTGGAACTCCTCTTCCCTCACTTCTCCCTGAGA AGCGTCGTTCTTCCAATCAGCCTTGTCGACTGGATTCTCTACATCGTCACTGTTTGCTTA GACACGGAGCTGCCTCTTATTCCAGCATCGAACATTTTGGTGCATTTTGGGGCGAATTAT CCGCCTCTGATAAAGCAGGGTCAGGTGTGGCGCCTGCTTCTTCCCGTTTTTCTGCACGCG AACTTTTTCCATGTTTTCTTCAATGTCTTCTTTCAACTCCGCATGGGGTTCACCATCGAG CGGCGCTACGGTCTGCTCAAGTTTGCCATTCTCTACTTCGCGTCCGCAATTTACGGGAAC CTTCTCTCGGCCACTGCCTTCTTCTGTAACACTCTCAAAGTCGGAGCCAGCACGGCAGGC TTCGGTTTGATCGGGATCCAAATTTGCGAGATGGCGCTGACGTGGCATCGCATGCGACAT CGCGACCGCATGCTGATGAACATGGTGTCCTTTGTACTCTTGATGATTCTCCTCATGTTC ACTCTCAATGGAGGGAGCATCGACCAGATGGGCCACCTTGGAGGCCTTCTCTGCGGGTTT CTCTATCGGCATCTTGTACAACAAGGGCTTGAACGATAA
  • Download Fasta

  • Fasta :-

    MARVRTLADLRTEEEADENTPLYNAETGSRDSDSTSSGGTAPRSMPIRFLELLFPHFSLR SVVLPISLVDWILYIVTVCLDTELPLIPASNILVHFGANYPPLIKQGQVWRLLLPVFLHA NFFHVFFNVFFQLRMGFTIERRYGLLKFAILYFASAIYGNLLSATAFFCNTLKVGASTAG FGLIGIQICEMALTWHRMRHRDRMLMNMVSFVLLMILLMFTLNGGSIDQMGHLGGLLCGF LYRHLVQQGLER

    No Results
No Results
No Results
IDSitePeptideScoreMethod
NCLIV_03814032 SGSRDSDSTS0.995unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India