NCLIV_039000 | probable 26S protease regulatory subunit 6B

_IDPredictionOTHERSPmTPCS_Position
NCLIV_039000OTHER0.9999760.0000010.000024
No Results

  • Fasta :-

    >NCLIV_039000 MGNAQPRGGGFPGGSEEDKEKKKERKRLEAAPPTHVGKRKKRGKGPVGHSKLPTVTPITK CRLRLLRLERIKDYLLLEEEYITNQEQRKPAEEKNEEDVNRVDELRGSPLSVGNLEEIID EQHAIVSSSIGPEYYVNILSFVDKDILEPGCSVLLHNKTSSIVGILNDEVDPLISVMKVE KAPLETYADIGGLEKQIQEVKEAVEFPLTHPEFFDDIGISPPKGVILYGPPGTGKTLLAK AVANETSATFLRVVGSELIQKYLGDGPKLVREMFKLAHEHAPSIVFIDEIDAVGTKRYDA TSGGEKEIQRTMLELLNQLDGFESKGDVKVIMATNRIESLDPALIRPGRIDRKIQLPNPD TKTKRKIFQIHTAKMTMADDVDLEEFVMAKDELSGADIKATCTEAGLLALRERRMKITQE DLRKAKEKALYQKKGNIPESLYL
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NCLIV_039000.fa Sequence name : NCLIV_039000 Sequence length : 443 VALUES OF COMPUTED PARAMETERS Coef20 : 1.998 CoefTot : -1.907 ChDiff : -5 ZoneTo : 15 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.600 1.059 -0.014 0.446 MesoH : -0.664 0.348 -0.400 0.240 MuHd_075 : 26.447 10.515 6.463 3.560 MuHd_095 : 13.078 7.030 2.222 2.449 MuHd_100 : 17.413 8.907 3.325 2.562 MuHd_105 : 16.046 8.673 3.153 2.322 Hmax_075 : 5.133 -1.867 -1.384 1.913 Hmax_095 : 1.900 0.200 -2.022 2.140 Hmax_100 : 6.000 0.200 -1.394 2.030 Hmax_105 : 2.700 -2.300 -1.768 1.170 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9880 0.0120 DFMC : 0.9772 0.0228
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 443 NCLIV_039000 MGNAQPRGGGFPGGSEEDKEKKKERKRLEAAPPTHVGKRKKRGKGPVGHSKLPTVTPITKCRLRLLRLERIKDYLLLEEE 80 YITNQEQRKPAEEKNEEDVNRVDELRGSPLSVGNLEEIIDEQHAIVSSSIGPEYYVNILSFVDKDILEPGCSVLLHNKTS 160 SIVGILNDEVDPLISVMKVEKAPLETYADIGGLEKQIQEVKEAVEFPLTHPEFFDDIGISPPKGVILYGPPGTGKTLLAK 240 AVANETSATFLRVVGSELIQKYLGDGPKLVREMFKLAHEHAPSIVFIDEIDAVGTKRYDATSGGEKEIQRTMLELLNQLD 320 GFESKGDVKVIMATNRIESLDPALIRPGRIDRKIQLPNPDTKTKRKIFQIHTAKMTMADDVDLEEFVMAKDELSGADIKA 400 TCTEAGLLALRERRMKITQEDLRKAKEKALYQKKGNIPESLYL 480 .........................................P...................................... 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 .............P............................. 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 2 Name Pos Context Score Pred ____________________________v_________________ NCLIV_039000 7 MGNAQPR|GG 0.129 . NCLIV_039000 19 GGSEEDK|EK 0.073 . NCLIV_039000 21 SEEDKEK|KK 0.068 . NCLIV_039000 22 EEDKEKK|KE 0.087 . NCLIV_039000 23 EDKEKKK|ER 0.091 . NCLIV_039000 25 KEKKKER|KR 0.090 . NCLIV_039000 26 EKKKERK|RL 0.131 . NCLIV_039000 27 KKKERKR|LE 0.133 . NCLIV_039000 38 PPTHVGK|RK 0.064 . NCLIV_039000 39 PTHVGKR|KK 0.229 . NCLIV_039000 40 THVGKRK|KR 0.144 . NCLIV_039000 41 HVGKRKK|RG 0.095 . NCLIV_039000 42 VGKRKKR|GK 0.825 *ProP* NCLIV_039000 44 KRKKRGK|GP 0.072 . NCLIV_039000 51 GPVGHSK|LP 0.066 . NCLIV_039000 60 TVTPITK|CR 0.056 . NCLIV_039000 62 TPITKCR|LR 0.081 . NCLIV_039000 64 ITKCRLR|LL 0.073 . NCLIV_039000 67 CRLRLLR|LE 0.148 . NCLIV_039000 70 RLLRLER|IK 0.184 . NCLIV_039000 72 LRLERIK|DY 0.066 . NCLIV_039000 88 ITNQEQR|KP 0.092 . NCLIV_039000 89 TNQEQRK|PA 0.125 . NCLIV_039000 94 RKPAEEK|NE 0.071 . NCLIV_039000 101 NEEDVNR|VD 0.084 . NCLIV_039000 106 NRVDELR|GS 0.084 . NCLIV_039000 144 ILSFVDK|DI 0.101 . NCLIV_039000 158 SVLLHNK|TS 0.061 . NCLIV_039000 178 PLISVMK|VE 0.061 . NCLIV_039000 181 SVMKVEK|AP 0.058 . NCLIV_039000 195 DIGGLEK|QI 0.063 . NCLIV_039000 201 KQIQEVK|EA 0.061 . NCLIV_039000 223 IGISPPK|GV 0.079 . NCLIV_039000 235 GPPGTGK|TL 0.061 . NCLIV_039000 240 GKTLLAK|AV 0.077 . NCLIV_039000 252 TSATFLR|VV 0.199 . NCLIV_039000 261 GSELIQK|YL 0.086 . NCLIV_039000 268 YLGDGPK|LV 0.073 . NCLIV_039000 271 DGPKLVR|EM 0.074 . NCLIV_039000 275 LVREMFK|LA 0.080 . NCLIV_039000 296 IDAVGTK|RY 0.061 . NCLIV_039000 297 DAVGTKR|YD 0.177 . NCLIV_039000 306 ATSGGEK|EI 0.062 . NCLIV_039000 310 GEKEIQR|TM 0.080 . NCLIV_039000 325 LDGFESK|GD 0.071 . NCLIV_039000 329 ESKGDVK|VI 0.061 . NCLIV_039000 336 VIMATNR|IE 0.076 . NCLIV_039000 346 LDPALIR|PG 0.079 . NCLIV_039000 349 ALIRPGR|ID 0.232 . NCLIV_039000 352 RPGRIDR|KI 0.193 . NCLIV_039000 353 PGRIDRK|IQ 0.077 . NCLIV_039000 362 LPNPDTK|TK 0.077 . NCLIV_039000 364 NPDTKTK|RK 0.072 . NCLIV_039000 365 PDTKTKR|KI 0.239 . NCLIV_039000 366 DTKTKRK|IF 0.085 . NCLIV_039000 374 FQIHTAK|MT 0.070 . NCLIV_039000 390 EEFVMAK|DE 0.065 . NCLIV_039000 399 LSGADIK|AT 0.069 . NCLIV_039000 411 AGLLALR|ER 0.069 . NCLIV_039000 413 LLALRER|RM 0.080 . NCLIV_039000 414 LALRERR|MK 0.508 *ProP* NCLIV_039000 416 LRERRMK|IT 0.138 . NCLIV_039000 423 ITQEDLR|KA 0.078 . NCLIV_039000 424 TQEDLRK|AK 0.112 . NCLIV_039000 426 EDLRKAK|EK 0.110 . NCLIV_039000 428 LRKAKEK|AL 0.102 . NCLIV_039000 433 EKALYQK|KG 0.062 . NCLIV_039000 434 KALYQKK|GN 0.097 . ____________________________^_________________

  • Fasta :-

    >NCLIV_039000 ATGGGAAACGCCCAACCGCGCGGCGGAGGCTTCCCAGGAGGCTCTGAAGAAGACAAGGAG AAGAAGAAAGAGAGAAAGAGACTCGAGGCGGCTCCACCCACCCACGTCGGAAAGAGAAAG AAGCGAGGAAAGGGACCGGTTGGACACAGCAAGCTTCCCACTGTGACGCCGATTACAAAG TGTCGCCTGCGTCTCCTCCGTCTCGAGCGCATCAAAGATTACCTTCTTCTCGAGGAAGAG TATATCACGAACCAGGAGCAACGGAAACCCGCCGAGGAGAAGAACGAGGAAGACGTGAAC CGCGTGGACGAACTGCGAGGCTCGCCGCTGAGTGTCGGGAACCTCGAAGAAATCATCGAC GAGCAGCACGCGATCGTCTCGTCCTCAATCGGCCCCGAGTACTACGTCAACATTCTTTCT TTCGTCGACAAAGACATTCTCGAGCCAGGATGCAGCGTCCTCCTCCACAACAAAACGAGC AGCATCGTGGGAATTTTGAACGACGAAGTTGATCCCCTCATCTCCGTCATGAAAGTTGAG AAGGCTCCCCTCGAGACTTACGCCGACATTGGCGGCTTGGAGAAACAGATTCAGGAAGTG AAGGAAGCGGTCGAGTTCCCTCTGACCCATCCTGAGTTCTTCGACGACATCGGCATCAGT CCACCAAAGGGCGTCATTCTCTACGGGCCCCCAGGAACAGGAAAGACGCTTCTCGCGAAG GCCGTGGCCAACGAGACTTCCGCGACCTTTCTTCGAGTTGTCGGGAGTGAACTGATTCAA AAGTACTTGGGAGACGGACCGAAGCTGGTCAGGGAAATGTTCAAACTCGCCCACGAGCAC GCGCCGAGCATTGTCTTCATCGACGAAATCGACGCGGTCGGGACGAAACGGTACGACGCC ACGAGCGGAGGAGAGAAAGAGATTCAGCGAACTATGCTGGAGTTGCTCAACCAACTCGAT GGCTTCGAAAGCAAAGGAGACGTGAAAGTGATCATGGCCACCAATCGAATCGAGAGTCTT GACCCTGCGCTCATTCGACCTGGACGCATCGACCGAAAGATTCAGCTGCCGAATCCAGAC ACCAAAACAAAGCGGAAGATCTTCCAGATTCACACCGCGAAGATGACCATGGCGGACGAC GTCGACCTCGAGGAGTTTGTCATGGCGAAGGACGAACTCTCCGGCGCCGACATCAAGGCG ACGTGCACGGAGGCAGGGCTGCTGGCTCTGCGCGAACGGCGCATGAAGATCACCCAGGAA GACCTGAGGAAAGCGAAGGAGAAGGCGCTTTACCAGAAGAAGGGAAACATTCCGGAGAGT CTCTACCTCTGA
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  • Fasta :-

    MGNAQPRGGGFPGGSEEDKEKKKERKRLEAAPPTHVGKRKKRGKGPVGHSKLPTVTPITK CRLRLLRLERIKDYLLLEEEYITNQEQRKPAEEKNEEDVNRVDELRGSPLSVGNLEEIID EQHAIVSSSIGPEYYVNILSFVDKDILEPGCSVLLHNKTSSIVGILNDEVDPLISVMKVE KAPLETYADIGGLEKQIQEVKEAVEFPLTHPEFFDDIGISPPKGVILYGPPGTGKTLLAK AVANETSATFLRVVGSELIQKYLGDGPKLVREMFKLAHEHAPSIVFIDEIDAVGTKRYDA TSGGEKEIQRTMLELLNQLDGFESKGDVKVIMATNRIESLDPALIRPGRIDRKIQLPNPD TKTKRKIFQIHTAKMTMADDVDLEEFVMAKDELSGADIKATCTEAGLLALRERRMKITQE DLRKAKEKALYQKKGNIPESLYL

  • title: ATP binding site
  • coordinates: P230,P231,G232,T233,G234,K235,T236,L237,D288,N335
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
NCLIV_03900015 SFPGGSEEDK0.995unspNCLIV_039000302 SYDATSGGEK0.997unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India