NCLIV_042370 | hypothetical protein

_IDPredictionOTHERSPmTPCS_Position
NCLIV_042370OTHER0.9993850.0003410.000274
No Results

  • Fasta :-

    >NCLIV_042370 MLVPCPSPLPAVRPLHDEAEERSLPVSLAAPMERRFSPYVNNGGTVVCVAGEDFAVAVGD TRLSTGFSIYSRFQSKITKLTDKVVLATSGMQADKTTLHNLLQIRIEQYTHQHRHPPSLN AIAQLLSTMLYSRRFFPFYTFNVLCGIDENGKGAVYGYDAIGSFEAARYNCAGTGAHLIM PVLDNQISRNNQQGEKAPLTREQVVDIIKSAVASAGERDIFTGDQAEVVMISQSGIEKTL MDLRAD
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NCLIV_042370.fa Sequence name : NCLIV_042370 Sequence length : 246 VALUES OF COMPUTED PARAMETERS Coef20 : 3.135 CoefTot : -0.750 ChDiff : -3 ZoneTo : 16 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.818 1.318 0.144 0.534 MesoH : -0.412 0.250 -0.312 0.216 MuHd_075 : 27.858 10.208 6.335 4.123 MuHd_095 : 20.625 8.715 4.147 3.338 MuHd_100 : 22.593 14.075 5.471 3.937 MuHd_105 : 22.614 18.990 6.529 4.945 Hmax_075 : 12.367 10.267 2.667 3.932 Hmax_095 : 9.800 10.000 1.311 3.980 Hmax_100 : 12.000 11.400 2.651 3.990 Hmax_105 : 16.200 18.400 4.081 5.450 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9587 0.0413 DFMC : 0.9610 0.0390
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 246 NCLIV_042370 MLVPCPSPLPAVRPLHDEAEERSLPVSLAAPMERRFSPYVNNGGTVVCVAGEDFAVAVGDTRLSTGFSIYSRFQSKITKL 80 TDKVVLATSGMQADKTTLHNLLQIRIEQYTHQHRHPPSLNAIAQLLSTMLYSRRFFPFYTFNVLCGIDENGKGAVYGYDA 160 IGSFEAARYNCAGTGAHLIMPVLDNQISRNNQQGEKAPLTREQVVDIIKSAVASAGERDIFTGDQAEVVMISQSGIEKTL 240 MDLRAD 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ...... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ NCLIV_042370 13 SPLPAVR|PL 0.098 . NCLIV_042370 22 HDEAEER|SL 0.149 . NCLIV_042370 34 LAAPMER|RF 0.103 . NCLIV_042370 35 AAPMERR|FS 0.139 . NCLIV_042370 62 VAVGDTR|LS 0.065 . NCLIV_042370 72 GFSIYSR|FQ 0.142 . NCLIV_042370 76 YSRFQSK|IT 0.066 . NCLIV_042370 79 FQSKITK|LT 0.079 . NCLIV_042370 83 ITKLTDK|VV 0.067 . NCLIV_042370 95 SGMQADK|TT 0.066 . NCLIV_042370 105 HNLLQIR|IE 0.072 . NCLIV_042370 114 QYTHQHR|HP 0.069 . NCLIV_042370 133 STMLYSR|RF 0.072 . NCLIV_042370 134 TMLYSRR|FF 0.126 . NCLIV_042370 152 GIDENGK|GA 0.065 . NCLIV_042370 168 GSFEAAR|YN 0.137 . NCLIV_042370 189 LDNQISR|NN 0.133 . NCLIV_042370 196 NNQQGEK|AP 0.057 . NCLIV_042370 201 EKAPLTR|EQ 0.075 . NCLIV_042370 209 QVVDIIK|SA 0.074 . NCLIV_042370 218 VASAGER|DI 0.139 . NCLIV_042370 238 SQSGIEK|TL 0.070 . NCLIV_042370 244 KTLMDLR|AD 0.074 . ____________________________^_________________

  • Fasta :-

    >NCLIV_042370 ATGCTGGTGCCTTGCCCCTCGCCTTTGCCGGCCGTGCGGCCTCTCCACGACGAGGCGGAG GAACGCTCGCTTCCGGTGTCTCTTGCAGCGCCGATGGAGCGCCGCTTCAGCCCCTACGTC AACAATGGAGGGACGGTGGTGTGCGTCGCCGGCGAGGACTTTGCCGTCGCTGTGGGAGAC ACGCGCCTATCGACCGGCTTCTCCATCTACTCGCGCTTCCAGTCGAAAATCACGAAACTG ACCGACAAAGTTGTCCTTGCGACCTCCGGCATGCAAGCTGACAAGACGACTCTCCACAAC CTCCTTCAGATCCGCATCGAACAGTACACGCACCAGCACCGCCATCCTCCGAGCCTGAAC GCAATCGCTCAGCTCCTGTCGACGATGCTCTACTCGCGTCGCTTCTTCCCGTTCTACACC TTCAACGTCCTCTGCGGAATCGACGAAAATGGGAAAGGTGCAGTGTATGGCTACGACGCG ATCGGCTCTTTTGAGGCTGCCAGGTACAACTGCGCGGGTACCGGCGCTCACCTCATCATG CCCGTCCTCGACAACCAGATTTCCCGGAATAATCAGCAAGGCGAGAAGGCACCTTTGACT AGAGAACAGGTCGTCGACATCATCAAGAGTGCAGTTGCCTCTGCGGGAGAGCGCGATATT TTCACAGGTGACCAGGCTGAAGTGGTGATGATCAGCCAGAGCGGGATCGAGAAGACTCTC ATGGACCTCCGTGCCGATTAA
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  • Fasta :-

    MLVPCPSPLPAVRPLHDEAEERSLPVSLAAPMERRFSPYVNNGGTVVCVAGEDFAVAVGD TRLSTGFSIYSRFQSKITKLTDKVVLATSGMQADKTTLHNLLQIRIEQYTHQHRHPPSLN AIAQLLSTMLYSRRFFPFYTFNVLCGIDENGKGAVYGYDAIGSFEAARYNCAGTGAHLIM PVLDNQISRNNQQGEKAPLTREQVVDIIKSAVASAGERDIFTGDQAEVVMISQSGIEKTL MDLRAD

  • title: active site
  • coordinates: G44,D60,R62,K76,T174,D219,T222,G223
No Results
No Results
IDSitePeptideScoreMethod
NCLIV_04237037 SERRFSPYVN0.997unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India