NCLIV_045240 | putative eukaryotic translation initiation factor 3 subunit 5

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0005515      

  • Computed_GO_Functions:  protein binding      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
NCLIV_045240OTHER0.8890000.0014630.109538
No Results

  • Fasta :-

    >NCLIV_045240 MMRSVSRSVGTSSQQHNVPKHFDILPYPPLKVRVHPVVVLTILDAYLRREEGQMNVIGTL LGTVSEGNVVDISDCFVDRHSLTDEGLLQIIKDHHETMYELKQQVSGSGAKDIVVGWFCT GSEMTELTCAVHGWFKQFNTVSKFHPQPPLTEPIHLMVNTTMDRDNLSIKAYMQVPMNMA KDACFQFQELPLELFASSSDRAGLSLLLKVREANRRHRQQHEGNRASALSSSAPSSAAAV AAISDTPGVAGVPVIKQGLGAALEKLSDQLNKCGAYVRSVLDGSEKADPEIGRFLSKALC VEAVQDLEVFEQMCQNALQDNLMVVHLTSLARLQFAVAEKLNTSFF
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NCLIV_045240.fa Sequence name : NCLIV_045240 Sequence length : 346 VALUES OF COMPUTED PARAMETERS Coef20 : 4.160 CoefTot : -1.844 ChDiff : -6 ZoneTo : 43 KR : 5 DE : 1 CleavSite : 35 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.359 1.482 0.178 0.574 MesoH : -0.476 0.324 -0.335 0.173 MuHd_075 : 22.940 18.685 8.473 5.941 MuHd_095 : 31.096 17.607 8.819 7.006 MuHd_100 : 32.397 18.143 8.716 6.778 MuHd_105 : 35.116 20.172 9.144 7.399 Hmax_075 : 6.183 8.283 0.068 3.208 Hmax_095 : 8.225 8.200 -0.322 2.467 Hmax_100 : 10.200 8.600 -0.224 2.720 Hmax_105 : 4.100 13.767 1.855 1.820 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.5417 0.4583 DFMC : 0.4864 0.5136 This protein is probably imported in mitochondria. f(Ser) = 0.1163 f(Arg) = 0.0698 CMi = 0.69348 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 346 NCLIV_045240 MMRSVSRSVGTSSQQHNVPKHFDILPYPPLKVRVHPVVVLTILDAYLRREEGQMNVIGTLLGTVSEGNVVDISDCFVDRH 80 SLTDEGLLQIIKDHHETMYELKQQVSGSGAKDIVVGWFCTGSEMTELTCAVHGWFKQFNTVSKFHPQPPLTEPIHLMVNT 160 TMDRDNLSIKAYMQVPMNMAKDACFQFQELPLELFASSSDRAGLSLLLKVREANRRHRQQHEGNRASALSSSAPSSAAAV 240 AAISDTPGVAGVPVIKQGLGAALEKLSDQLNKCGAYVRSVLDGSEKADPEIGRFLSKALCVEAVQDLEVFEQMCQNALQD 320 NLMVVHLTSLARLQFAVAEKLNTSFF 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 .......................... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ NCLIV_045240 3 ----MMR|SV 0.313 . NCLIV_045240 7 MMRSVSR|SV 0.351 . NCLIV_045240 20 QQHNVPK|HF 0.080 . NCLIV_045240 31 LPYPPLK|VR 0.054 . NCLIV_045240 33 YPPLKVR|VH 0.080 . NCLIV_045240 48 ILDAYLR|RE 0.074 . NCLIV_045240 49 LDAYLRR|EE 0.151 . NCLIV_045240 79 SDCFVDR|HS 0.095 . NCLIV_045240 92 GLLQIIK|DH 0.059 . NCLIV_045240 102 ETMYELK|QQ 0.060 . NCLIV_045240 111 VSGSGAK|DI 0.076 . NCLIV_045240 136 AVHGWFK|QF 0.065 . NCLIV_045240 143 QFNTVSK|FH 0.070 . NCLIV_045240 164 VNTTMDR|DN 0.076 . NCLIV_045240 170 RDNLSIK|AY 0.089 . NCLIV_045240 181 VPMNMAK|DA 0.116 . NCLIV_045240 201 FASSSDR|AG 0.083 . NCLIV_045240 209 GLSLLLK|VR 0.066 . NCLIV_045240 211 SLLLKVR|EA 0.095 . NCLIV_045240 215 KVREANR|RH 0.080 . NCLIV_045240 216 VREANRR|HR 0.153 . NCLIV_045240 218 EANRRHR|QQ 0.356 . NCLIV_045240 225 QQHEGNR|AS 0.075 . NCLIV_045240 256 AGVPVIK|QG 0.057 . NCLIV_045240 265 LGAALEK|LS 0.064 . NCLIV_045240 272 LSDQLNK|CG 0.062 . NCLIV_045240 278 KCGAYVR|SV 0.164 . NCLIV_045240 286 VLDGSEK|AD 0.060 . NCLIV_045240 293 ADPEIGR|FL 0.154 . NCLIV_045240 297 IGRFLSK|AL 0.069 . NCLIV_045240 332 HLTSLAR|LQ 0.081 . NCLIV_045240 340 QFAVAEK|LN 0.060 . ____________________________^_________________

  • Fasta :-

    >NCLIV_045240 ATGATGCGCTCAGTGTCAAGGTCCGTTGGGACCTCGTCTCAGCAGCACAATGTGCCAAAA CACTTTGATATTCTCCCGTATCCGCCCCTCAAAGTGCGCGTCCATCCCGTCGTTGTCCTG ACGATTTTGGACGCTTACCTGAGACGCGAAGAAGGCCAGATGAACGTCATTGGAACGCTG CTGGGAACGGTATCTGAAGGCAATGTCGTGGACATCTCTGACTGCTTCGTCGACAGACAC TCTCTTACGGATGAGGGTCTGCTGCAAATCATCAAGGACCACCACGAGACCATGTACGAG TTGAAGCAACAAGTTAGCGGCAGCGGCGCGAAGGACATCGTCGTAGGGTGGTTTTGCACC GGCAGCGAAATGACCGAGTTGACGTGCGCCGTCCACGGCTGGTTCAAACAGTTCAACACC GTGTCCAAGTTCCATCCGCAGCCGCCGCTTACGGAGCCGATTCACCTGATGGTGAACACC ACCATGGATCGCGACAACCTGTCCATCAAGGCCTACATGCAAGTCCCGATGAACATGGCG AAGGACGCGTGCTTTCAGTTCCAGGAGTTGCCCCTGGAGCTCTTCGCCTCGTCCTCTGAC CGGGCTGGCCTCTCCCTCCTCCTCAAGGTCAGGGAAGCGAACCGACGTCACCGGCAGCAG CACGAGGGCAACCGGGCGAGCGCGCTGTCGAGCAGCGCACCCTCTTCGGCCGCTGCTGTG GCAGCCATTAGCGACACGCCGGGCGTTGCAGGTGTCCCAGTCATCAAGCAAGGCTTGGGC GCGGCTCTCGAGAAGCTGTCGGACCAGCTGAACAAGTGCGGGGCGTACGTGCGGAGCGTC CTTGACGGATCCGAGAAGGCAGATCCTGAAATCGGTCGGTTCCTTAGCAAGGCGCTCTGC GTGGAAGCTGTTCAGGACCTCGAGGTCTTTGAACAAATGTGCCAAAACGCGCTCCAAGAT AACCTCATGGTGGTCCACCTGACCAGCCTGGCTCGGCTGCAGTTTGCGGTTGCTGAGAAA CTCAACACGTCCTTCTTCTAA
  • Download Fasta

  • Fasta :-

    MMRSVSRSVGTSSQQHNVPKHFDILPYPPLKVRVHPVVVLTILDAYLRREEGQMNVIGTL LGTVSEGNVVDISDCFVDRHSLTDEGLLQIIKDHHETMYELKQQVSGSGAKDIVVGWFCT GSEMTELTCAVHGWFKQFNTVSKFHPQPPLTEPIHLMVNTTMDRDNLSIKAYMQVPMNMA KDACFQFQELPLELFASSSDRAGLSLLLKVREANRRHRQQHEGNRASALSSSAPSSAAAV AAISDTPGVAGVPVIKQGLGAALEKLSDQLNKCGAYVRSVLDGSEKADPEIGRFLSKALC VEAVQDLEVFEQMCQNALQDNLMVVHLTSLARLQFAVAEKLNTSFF

    No Results
    No Results
No Results
No Results
IDSitePeptideScoreMethod
NCLIV_04524081 SVDRHSLTDE0.998unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India