NCLIV_048550 | putative 26S proteasome non-ATPase regulatory subunit 4

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_IDPredictionOTHERSPmTPCS_Position
NCLIV_048550OTHER0.9949410.0050340.000026
No Results

  • Fasta :-

    >NCLIV_048550 MVLEAVMLCIDNSAYARDGDLVPSRLAVQEEAAGLIAGAKTSMHQENAVGVLTYGEERVS VHLSPTNDMGAVLSALHGLRCGGDSDFVRGIQIAQLALKHRMNKNQKQRIIAFVGSPIKT AEKQLVTLGKQLKKNNVSLDLISFGEVDHNAQRLKLLNEAVDSNGTSCLLECRAEAGQML SEVILASSLLRDPETGASLRSVPGVGGDSGPAGGVGAMNEFGVDPNTDPELYMVLQLSLQ EEQNRAARLQEQTTPSAGEDARGASEQGGANGASAAAGASSVPTAAQIEMMEDIDDELRQ ALLLSLQDYSGQPPASEDAEMEAAPAPSDGGEGEKSAADQPSEANEVGEEKREQPADSEL AHVLGSLPGVDVSDPRLQEVLREAAGSPGDAEGETEKNNGGS
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NCLIV_048550.fa Sequence name : NCLIV_048550 Sequence length : 402 VALUES OF COMPUTED PARAMETERS Coef20 : 3.855 CoefTot : 0.122 ChDiff : -33 ZoneTo : 3 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.035 1.053 0.069 0.453 MesoH : -0.623 0.194 -0.317 0.184 MuHd_075 : 19.011 9.689 5.342 4.298 MuHd_095 : 12.472 12.940 5.483 1.503 MuHd_100 : 23.077 15.865 8.037 2.285 MuHd_105 : 28.132 16.791 9.279 3.721 Hmax_075 : 13.533 15.050 3.571 5.413 Hmax_095 : 3.150 12.075 1.649 3.640 Hmax_100 : 9.200 13.900 1.974 3.590 Hmax_105 : 15.300 20.200 4.990 5.430 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9815 0.0185 DFMC : 0.9641 0.0359
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 402 NCLIV_048550 MVLEAVMLCIDNSAYARDGDLVPSRLAVQEEAAGLIAGAKTSMHQENAVGVLTYGEERVSVHLSPTNDMGAVLSALHGLR 80 CGGDSDFVRGIQIAQLALKHRMNKNQKQRIIAFVGSPIKTAEKQLVTLGKQLKKNNVSLDLISFGEVDHNAQRLKLLNEA 160 VDSNGTSCLLECRAEAGQMLSEVILASSLLRDPETGASLRSVPGVGGDSGPAGGVGAMNEFGVDPNTDPELYMVLQLSLQ 240 EEQNRAARLQEQTTPSAGEDARGASEQGGANGASAAAGASSVPTAAQIEMMEDIDDELRQALLLSLQDYSGQPPASEDAE 320 MEAAPAPSDGGEGEKSAADQPSEANEVGEEKREQPADSELAHVLGSLPGVDVSDPRLQEVLREAAGSPGDAEGETEKNNG 400 GS 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 .. 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ NCLIV_048550 17 DNSAYAR|DG 0.126 . NCLIV_048550 25 GDLVPSR|LA 0.111 . NCLIV_048550 40 GLIAGAK|TS 0.075 . NCLIV_048550 58 LTYGEER|VS 0.066 . NCLIV_048550 80 SALHGLR|CG 0.089 . NCLIV_048550 89 GDSDFVR|GI 0.154 . NCLIV_048550 99 IAQLALK|HR 0.058 . NCLIV_048550 101 QLALKHR|MN 0.103 . NCLIV_048550 104 LKHRMNK|NQ 0.134 . NCLIV_048550 107 RMNKNQK|QR 0.071 . NCLIV_048550 109 NKNQKQR|II 0.128 . NCLIV_048550 119 FVGSPIK|TA 0.077 . NCLIV_048550 123 PIKTAEK|QL 0.062 . NCLIV_048550 130 QLVTLGK|QL 0.073 . NCLIV_048550 133 TLGKQLK|KN 0.071 . NCLIV_048550 134 LGKQLKK|NN 0.072 . NCLIV_048550 153 VDHNAQR|LK 0.069 . NCLIV_048550 155 HNAQRLK|LL 0.072 . NCLIV_048550 173 SCLLECR|AE 0.076 . NCLIV_048550 191 LASSLLR|DP 0.120 . NCLIV_048550 200 ETGASLR|SV 0.212 . NCLIV_048550 245 LQEEQNR|AA 0.123 . NCLIV_048550 248 EQNRAAR|LQ 0.306 . NCLIV_048550 262 SAGEDAR|GA 0.204 . NCLIV_048550 299 DIDDELR|QA 0.064 . NCLIV_048550 335 DGGEGEK|SA 0.088 . NCLIV_048550 351 NEVGEEK|RE 0.059 . NCLIV_048550 352 EVGEEKR|EQ 0.109 . NCLIV_048550 376 VDVSDPR|LQ 0.081 . NCLIV_048550 382 RLQEVLR|EA 0.110 . NCLIV_048550 397 AEGETEK|NN 0.068 . ____________________________^_________________

  • Fasta :-

    >NCLIV_048550 ATGGTGCTCGAGGCAGTGATGCTCTGCATCGACAACAGCGCCTACGCCCGAGATGGGGAT TTAGTCCCCTCTCGCCTGGCTGTTCAGGAAGAAGCTGCTGGCCTCATCGCCGGAGCCAAG ACGAGCATGCACCAAGAAAACGCGGTCGGCGTCCTGACCTACGGCGAAGAGAGGGTGTCC GTTCATCTCTCGCCAACGAACGACATGGGCGCAGTTCTCTCCGCTCTTCACGGTCTGCGC TGTGGGGGTGATTCTGACTTTGTCCGCGGCATCCAAATCGCCCAGCTGGCTTTGAAACAC CGCATGAACAAGAACCAGAAGCAGCGCATTATCGCGTTCGTGGGAAGCCCCATCAAAACC GCGGAAAAACAGCTTGTGACGCTCGGAAAGCAGCTGAAAAAGAACAACGTGTCACTTGAT TTGATTAGCTTCGGCGAGGTGGACCACAATGCCCAGAGACTGAAGCTTCTGAATGAAGCC GTCGACAGCAACGGAACCAGCTGCCTTTTGGAGTGCCGAGCTGAAGCTGGGCAGATGCTG AGCGAGGTGATTCTTGCCTCGAGCCTGTTGCGGGATCCGGAGACAGGCGCGAGCTTGCGG AGCGTTCCGGGAGTCGGCGGAGACTCCGGACCTGCAGGCGGCGTGGGGGCGATGAACGAG TTCGGCGTCGATCCGAACACAGATCCGGAGTTGTACATGGTCCTCCAACTCTCGCTGCAA GAGGAACAGAACCGCGCAGCGCGTCTCCAGGAGCAGACGACTCCCAGCGCCGGAGAAGAC GCCCGAGGGGCGTCAGAGCAAGGCGGAGCGAACGGTGCCAGCGCGGCGGCCGGTGCCTCG AGTGTCCCAACAGCTGCTCAGATCGAAATGATGGAGGACATCGACGACGAGTTACGGCAG GCGCTTCTTCTTTCGCTCCAGGACTACAGCGGCCAGCCTCCAGCTTCTGAGGACGCGGAG ATGGAAGCCGCGCCGGCGCCGAGCGACGGCGGGGAGGGCGAGAAGAGCGCCGCAGACCAA CCGTCAGAAGCGAACGAGGTTGGAGAAGAGAAGAGAGAACAACCAGCTGACAGCGAGCTA GCCCACGTCCTCGGCTCTCTGCCGGGCGTCGACGTCTCGGACCCTCGACTCCAAGAAGTC CTCAGAGAGGCCGCAGGCAGTCCAGGCGACGCGGAAGGGGAGACAGAGAAGAACAACGGG GGCAGCTGA
  • Download Fasta

  • Fasta :-

    MVLEAVMLCIDNSAYARDGDLVPSRLAVQEEAAGLIAGAKTSMHQENAVGVLTYGEERVS VHLSPTNDMGAVLSALHGLRCGGDSDFVRGIQIAQLALKHRMNKNQKQRIIAFVGSPIKT AEKQLVTLGKQLKKNNVSLDLISFGEVDHNAQRLKLLNEAVDSNGTSCLLECRAEAGQML SEVILASSLLRDPETGASLRSVPGVGGDSGPAGGVGAMNEFGVDPNTDPELYMVLQLSLQ EEQNRAARLQEQTTPSAGEDARGASEQGGANGASAAAGASSVPTAAQIEMMEDIDDELRQ ALLLSLQDYSGQPPASEDAEMEAAPAPSDGGEGEKSAADQPSEANEVGEEKREQPADSEL AHVLGSLPGVDVSDPRLQEVLREAAGSPGDAEGETEKNNGGS

  • title: metal ion-dependent adhesion site (MIDAS)
  • coordinates: D11,S85,G115
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
NCLIV_048550387 SEAAGSPGDA0.998unspNCLIV_048550387 SEAAGSPGDA0.998unspNCLIV_048550387 SEAAGSPGDA0.998unspNCLIV_04855060 SEERVSVHLS0.99unspNCLIV_048550336 SEGEKSAADQ0.992unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India