NCLIV_048880 | Proteasome subunit beta type-7, related

_IDPredictionOTHERSPmTPCS_Position
NCLIV_048880OTHER0.9991170.0004730.000410
No Results

  • Fasta :-

    >NCLIV_048880 MASSSCIAFSYDDLGLPVVANAPRSALPVPSAAGASAPVSTGTTIVAVSFQGGVVLGADT RTSAGSYVVNRAARKISRVHERMCVCRSGSAADTQAVTQIVKLYIQQYAQELPKGEEPRV EAAANVFQSLCYQHKDALTAGLIVAGYDKVKGGQIYAIPLGGALMPMNYTAGGSGSAFIS AFMDANFKDNMTQQEAVELVKKSVAYAISRDGSSGGMIRIVVITKDDMLEECVEGDKLPV AP
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NCLIV_048880.fa Sequence name : NCLIV_048880 Sequence length : 242 VALUES OF COMPUTED PARAMETERS Coef20 : 4.091 CoefTot : 0.573 ChDiff : -1 ZoneTo : 11 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.565 1.424 0.234 0.596 MesoH : 0.153 0.549 -0.100 0.286 MuHd_075 : 16.257 3.445 4.350 1.094 MuHd_095 : 11.303 7.772 4.606 1.914 MuHd_100 : 10.472 4.950 3.146 1.793 MuHd_105 : 11.566 4.406 1.688 2.219 Hmax_075 : 14.117 9.800 2.902 3.570 Hmax_095 : 11.463 12.162 3.293 3.980 Hmax_100 : 11.600 11.800 3.432 4.780 Hmax_105 : 13.400 14.100 2.213 4.940 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9821 0.0179 DFMC : 0.9524 0.0476
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 242 NCLIV_048880 MASSSCIAFSYDDLGLPVVANAPRSALPVPSAAGASAPVSTGTTIVAVSFQGGVVLGADTRTSAGSYVVNRAARKISRVH 80 ERMCVCRSGSAADTQAVTQIVKLYIQQYAQELPKGEEPRVEAAANVFQSLCYQHKDALTAGLIVAGYDKVKGGQIYAIPL 160 GGALMPMNYTAGGSGSAFISAFMDANFKDNMTQQEAVELVKKSVAYAISRDGSSGGMIRIVVITKDDMLEECVEGDKLPV 240 AP 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 .. 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ NCLIV_048880 24 VVANAPR|SA 0.165 . NCLIV_048880 61 VLGADTR|TS 0.072 . NCLIV_048880 71 GSYVVNR|AA 0.148 . NCLIV_048880 74 VVNRAAR|KI 0.393 . NCLIV_048880 75 VNRAARK|IS 0.093 . NCLIV_048880 78 AARKISR|VH 0.083 . NCLIV_048880 82 ISRVHER|MC 0.099 . NCLIV_048880 87 ERMCVCR|SG 0.231 . NCLIV_048880 102 AVTQIVK|LY 0.059 . NCLIV_048880 114 YAQELPK|GE 0.067 . NCLIV_048880 119 PKGEEPR|VE 0.089 . NCLIV_048880 135 SLCYQHK|DA 0.090 . NCLIV_048880 149 IVAGYDK|VK 0.067 . NCLIV_048880 151 AGYDKVK|GG 0.061 . NCLIV_048880 188 FMDANFK|DN 0.070 . NCLIV_048880 201 EAVELVK|KS 0.055 . NCLIV_048880 202 AVELVKK|SV 0.164 . NCLIV_048880 210 VAYAISR|DG 0.107 . NCLIV_048880 219 SSGGMIR|IV 0.115 . NCLIV_048880 225 RIVVITK|DD 0.070 . NCLIV_048880 237 ECVEGDK|LP 0.051 . ____________________________^_________________

  • Fasta :-

    >NCLIV_048880 ATGGCGTCTTCGTCCTGCATCGCCTTCTCGTACGACGACCTCGGGCTGCCTGTCGTCGCG AACGCGCCCCGCTCCGCGCTTCCCGTTCCCTCTGCTGCTGGTGCATCCGCTCCAGTTTCC ACCGGGACGACGATCGTGGCAGTTTCCTTCCAGGGAGGCGTCGTTCTCGGCGCCGACACG CGCACCTCTGCCGGCAGCTACGTGGTCAACCGCGCCGCCCGCAAAATCAGCCGAGTCCAC GAGAGAATGTGTGTGTGTCGCTCGGGAAGTGCAGCCGACACGCAGGCAGTTACCCAGATC GTCAAGCTGTACATACAGCAGTACGCGCAGGAACTTCCGAAGGGCGAGGAGCCCCGAGTC GAAGCTGCGGCAAATGTCTTTCAGTCTCTGTGCTACCAGCACAAGGACGCGTTGACTGCT GGACTCATTGTCGCCGGCTACGATAAAGTTAAGGGGGGTCAAATCTACGCCATTCCTCTG GGAGGTGCTCTCATGCCCATGAACTACACTGCGGGGGGATCCGGTTCGGCGTTCATCAGC GCGTTCATGGACGCGAACTTCAAAGACAACATGACGCAGCAGGAGGCGGTCGAGCTGGTG AAAAAATCCGTTGCGTACGCGATCTCCAGAGACGGCTCTTCCGGCGGCATGATCAGAATT GTCGTCATCACCAAGGACGACATGCTCGAGGAATGCGTGGAGGGGGACAAACTGCCTGTC GCCCCGTAA
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  • Fasta :-

    MASSSCIAFSYDDLGLPVVANAPRSALPVPSAAGASAPVSTGTTIVAVSFQGGVVLGADT RTSAGSYVVNRAARKISRVHERMCVCRSGSAADTQAVTQIVKLYIQQYAQELPKGEEPRV EAAANVFQSLCYQHKDALTAGLIVAGYDKVKGGQIYAIPLGGALMPMNYTAGGSGSAFIS AFMDANFKDNMTQQEAVELVKKSVAYAISRDGSSGGMIRIVVITKDDMLEECVEGDKLPV AP

  • title: active site
  • coordinates: T43,D59,R61,K75,S174,D211,S214,G215
No Results
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Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India