NCLIV_051530 | hypothetical protein

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_IDPredictionOTHERSPmTPCS_Position
NCLIV_051530mTP0.0887410.4439050.467353CS pos: 66-67. RCF-AS. Pr: 0.6535
No Results

  • Fasta :-

    >NCLIV_051530 MSPLGFGSFLSPLLLFSVCPHLRTGISRSFSSLLKPQKFRPLVSRECPSVSGRFFIPSPQ IPSRCFASLPASSKMAIKVLVPVAHDSEEIEAVCIVDTLRRAGAEVMVASVEDNKLVRMS RGVCVQADKLISEVQNEVFDCIAVPGGMPGAERCRDSAILTKMLKAHKEQGKFIAAICAS PAVVFQTHGLLEGEKAVAYPCFMDKFPANVRGEGRVCVSNKIVTSVGPSSAIEFALKLVE VLYNEEQAKKIASQLLCS
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NCLIV_051530.fa Sequence name : NCLIV_051530 Sequence length : 258 VALUES OF COMPUTED PARAMETERS Coef20 : 3.968 CoefTot : -0.748 ChDiff : 6 ZoneTo : 85 KR : 10 DE : 1 CleavSite : 74 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.947 1.629 0.352 0.656 MesoH : -0.233 0.516 -0.232 0.237 MuHd_075 : 35.642 24.560 9.023 8.646 MuHd_095 : 36.604 31.395 10.372 9.953 MuHd_100 : 35.092 27.630 10.569 7.997 MuHd_105 : 35.027 20.239 9.690 7.605 Hmax_075 : 17.300 16.567 3.529 5.075 Hmax_095 : 13.650 21.525 1.893 6.387 Hmax_100 : 16.300 20.800 5.052 6.010 Hmax_105 : 15.517 15.800 4.346 4.818 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0188 0.9812 DFMC : 0.0168 0.9832 This protein is probably imported in chloroplast. f(Ser) = 0.1882 f(Arg) = 0.0706 CMi = 1.11498 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 258 NCLIV_051530 MSPLGFGSFLSPLLLFSVCPHLRTGISRSFSSLLKPQKFRPLVSRECPSVSGRFFIPSPQIPSRCFASLPASSKMAIKVL 80 VPVAHDSEEIEAVCIVDTLRRAGAEVMVASVEDNKLVRMSRGVCVQADKLISEVQNEVFDCIAVPGGMPGAERCRDSAIL 160 TKMLKAHKEQGKFIAAICASPAVVFQTHGLLEGEKAVAYPCFMDKFPANVRGEGRVCVSNKIVTSVGPSSAIEFALKLVE 240 VLYNEEQAKKIASQLLCS 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 .................. 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ NCLIV_051530 23 SVCPHLR|TG 0.070 . NCLIV_051530 28 LRTGISR|SF 0.150 . NCLIV_051530 35 SFSSLLK|PQ 0.056 . NCLIV_051530 38 SLLKPQK|FR 0.058 . NCLIV_051530 40 LKPQKFR|PL 0.088 . NCLIV_051530 45 FRPLVSR|EC 0.083 . NCLIV_051530 53 CPSVSGR|FF 0.196 . NCLIV_051530 64 SPQIPSR|CF 0.102 . NCLIV_051530 74 SLPASSK|MA 0.079 . NCLIV_051530 78 SSKMAIK|VL 0.070 . NCLIV_051530 100 CIVDTLR|RA 0.104 . NCLIV_051530 101 IVDTLRR|AG 0.107 . NCLIV_051530 115 ASVEDNK|LV 0.068 . NCLIV_051530 118 EDNKLVR|MS 0.102 . NCLIV_051530 121 KLVRMSR|GV 0.470 . NCLIV_051530 129 VCVQADK|LI 0.070 . NCLIV_051530 153 GMPGAER|CR 0.085 . NCLIV_051530 155 PGAERCR|DS 0.102 . NCLIV_051530 162 DSAILTK|ML 0.069 . NCLIV_051530 165 ILTKMLK|AH 0.059 . NCLIV_051530 168 KMLKAHK|EQ 0.064 . NCLIV_051530 172 AHKEQGK|FI 0.084 . NCLIV_051530 195 GLLEGEK|AV 0.060 . NCLIV_051530 205 YPCFMDK|FP 0.068 . NCLIV_051530 211 KFPANVR|GE 0.085 . NCLIV_051530 215 NVRGEGR|VC 0.070 . NCLIV_051530 221 RVCVSNK|IV 0.107 . NCLIV_051530 237 AIEFALK|LV 0.071 . NCLIV_051530 249 YNEEQAK|KI 0.073 . NCLIV_051530 250 NEEQAKK|IA 0.130 . ____________________________^_________________

  • Fasta :-

    >NCLIV_051530 ATGTCTCCTCTAGGCTTCGGATCGTTTCTTTCCCCGCTCCTTCTTTTTTCTGTGTGTCCT CACTTGCGAACTGGTATTTCCCGATCCTTCTCTTCTCTCTTGAAACCGCAAAAGTTTCGA CCCCTGGTTTCTCGCGAGTGTCCCAGTGTCTCGGGCCGATTTTTTATACCGTCTCCGCAG ATTCCGTCTCGGTGTTTCGCTTCGCTGCCTGCGTCGAGCAAAATGGCGATTAAAGTCCTC GTTCCCGTCGCCCACGACTCGGAGGAGATTGAGGCCGTCTGTATCGTCGATACTCTGCGC CGGGCCGGCGCCGAGGTGATGGTTGCCAGTGTCGAGGACAACAAACTCGTTCGCATGTCG CGCGGCGTTTGCGTCCAAGCAGACAAACTCATCTCGGAGGTTCAGAACGAGGTATTTGAC TGCATTGCCGTTCCGGGCGGCATGCCGGGGGCGGAGAGATGCCGAGACTCTGCAATTCTC ACGAAAATGCTGAAAGCGCACAAGGAACAAGGCAAGTTTATTGCTGCGATCTGCGCATCG CCCGCTGTCGTGTTCCAGACCCACGGCCTTCTTGAGGGAGAAAAGGCAGTTGCCTACCCT TGCTTCATGGACAAGTTCCCCGCTAACGTCCGCGGCGAGGGACGCGTGTGCGTCAGCAAT AAAATCGTGACTTCCGTCGGTCCCTCCAGCGCGATTGAATTCGCGCTGAAACTCGTTGAA GTGTTGTACAACGAGGAACAGGCGAAGAAGATCGCGTCCCAGCTTCTTTGCTCCTGA
  • Download Fasta

  • Fasta :-

    MSPLGFGSFLSPLLLFSVCPHLRTGISRSFSSLLKPQKFRPLVSRECPSVSGRFFIPSPQ IPSRCFASLPASSKMAIKVLVPVAHDSEEIEAVCIVDTLRRAGAEVMVASVEDNKLVRMS RGVCVQADKLISEVQNEVFDCIAVPGGMPGAERCRDSAILTKMLKAHKEQGKFIAAICAS PAVVFQTHGLLEGEKAVAYPCFMDKFPANVRGEGRVCVSNKIVTSVGPSSAIEFALKLVE VLYNEEQAKKIASQLLCS

  • title: conserved cys residue
  • coordinates: C178
No Results
No Results
IDSitePeptideScoreMethod
NCLIV_051530110 SVMVASVEDN0.996unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India