NCLIV_053220 | PsmB (EC 3.4.25.1), related

_IDPredictionOTHERSPmTPCS_Position
NCLIV_053220OTHER0.9951340.0007220.004143
No Results

  • Fasta :-

    >NCLIV_053220 MDSIAQLALQRGGYDFSNHQRNVRLLMDAAKRCPSSAGSPTPPGLPPARKTGTTICGVVC NGAVVLGADTRATEGTIVADKNCSKLHRIADNMYAAGAGTAADLDHMCDWLAVQVELHRL NTNAQPRVSMAVSVLSQELFKYQGYKGCAVVLGGVDFKGPHIYKIHPHGSTDCSNFAAMG SGSLNAMAILEAGYKDGMTLEEGKALVCDAIKAGVLNDLGSGGNIDLCIITREGAQHIRQ YETPTQRPFQATHPVFPKGTTPVLLEKIEHLKNRLEFSQEVEMVEA
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NCLIV_053220.fa Sequence name : NCLIV_053220 Sequence length : 286 VALUES OF COMPUTED PARAMETERS Coef20 : 3.372 CoefTot : 0.000 ChDiff : -2 ZoneTo : 1 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.476 1.600 0.418 0.574 MesoH : -0.291 0.289 -0.292 0.246 MuHd_075 : 23.983 10.962 6.819 4.847 MuHd_095 : 32.712 23.237 8.920 7.374 MuHd_100 : 16.659 14.301 4.415 4.688 MuHd_105 : 11.942 2.304 2.125 1.673 Hmax_075 : 4.900 5.717 -0.205 3.593 Hmax_095 : 17.200 16.200 2.851 6.060 Hmax_100 : 5.200 8.900 -0.075 4.060 Hmax_105 : 2.683 2.800 -0.985 2.220 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8029 0.1971 DFMC : 0.9439 0.0561
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 286 NCLIV_053220 MDSIAQLALQRGGYDFSNHQRNVRLLMDAAKRCPSSAGSPTPPGLPPARKTGTTICGVVCNGAVVLGADTRATEGTIVAD 80 KNCSKLHRIADNMYAAGAGTAADLDHMCDWLAVQVELHRLNTNAQPRVSMAVSVLSQELFKYQGYKGCAVVLGGVDFKGP 160 HIYKIHPHGSTDCSNFAAMGSGSLNAMAILEAGYKDGMTLEEGKALVCDAIKAGVLNDLGSGGNIDLCIITREGAQHIRQ 240 YETPTQRPFQATHPVFPKGTTPVLLEKIEHLKNRLEFSQEVEMVEA 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 .............................................. 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ NCLIV_053220 11 AQLALQR|GG 0.075 . NCLIV_053220 21 DFSNHQR|NV 0.131 . NCLIV_053220 24 NHQRNVR|LL 0.221 . NCLIV_053220 31 LLMDAAK|RC 0.062 . NCLIV_053220 32 LMDAAKR|CP 0.137 . NCLIV_053220 49 PGLPPAR|KT 0.120 . NCLIV_053220 50 GLPPARK|TG 0.084 . NCLIV_053220 71 VLGADTR|AT 0.098 . NCLIV_053220 81 GTIVADK|NC 0.062 . NCLIV_053220 85 ADKNCSK|LH 0.063 . NCLIV_053220 88 NCSKLHR|IA 0.139 . NCLIV_053220 119 VQVELHR|LN 0.074 . NCLIV_053220 127 NTNAQPR|VS 0.101 . NCLIV_053220 141 LSQELFK|YQ 0.083 . NCLIV_053220 146 FKYQGYK|GC 0.078 . NCLIV_053220 158 LGGVDFK|GP 0.067 . NCLIV_053220 164 KGPHIYK|IH 0.058 . NCLIV_053220 195 ILEAGYK|DG 0.069 . NCLIV_053220 204 MTLEEGK|AL 0.054 . NCLIV_053220 212 LVCDAIK|AG 0.054 . NCLIV_053220 232 DLCIITR|EG 0.083 . NCLIV_053220 239 EGAQHIR|QY 0.094 . NCLIV_053220 247 YETPTQR|PF 0.076 . NCLIV_053220 258 THPVFPK|GT 0.090 . NCLIV_053220 267 TPVLLEK|IE 0.060 . NCLIV_053220 272 EKIEHLK|NR 0.053 . NCLIV_053220 274 IEHLKNR|LE 0.123 . ____________________________^_________________

  • Fasta :-

    >NCLIV_053220 ATGGACAGCATCGCGCAGTTGGCCCTCCAGCGCGGAGGCTACGACTTCTCCAACCACCAG AGAAATGTCCGTTTGCTCATGGACGCGGCGAAGCGTTGTCCCTCCTCGGCAGGCTCGCCG ACGCCGCCCGGGTTGCCCCCCGCCCGAAAAACAGGGACGACCATCTGCGGGGTTGTGTGC AACGGCGCGGTCGTTTTGGGCGCCGACACACGCGCCACGGAAGGCACGATCGTGGCCGAC AAAAACTGCAGCAAACTCCACAGAATCGCCGATAACATGTACGCCGCAGGAGCCGGCACC GCTGCCGATCTGGACCACATGTGCGACTGGCTCGCCGTTCAGGTCGAATTGCACCGTCTC AACACCAATGCGCAGCCTCGCGTCTCCATGGCCGTTTCCGTTCTGAGCCAGGAGCTCTTC AAGTACCAGGGGTACAAGGGTTGCGCAGTGGTCCTCGGCGGCGTCGATTTCAAGGGCCCA CATATCTACAAAATTCATCCACACGGCAGCACGGACTGCTCGAACTTTGCAGCCATGGGC AGCGGCAGTCTGAATGCCATGGCCATCCTAGAGGCAGGGTACAAGGACGGCATGACACTG GAGGAGGGAAAGGCCCTCGTGTGCGATGCCATCAAAGCTGGTGTCCTGAACGATTTGGGG AGTGGCGGAAACATCGATCTGTGCATTATTACCCGTGAGGGTGCGCAGCACATTCGCCAG TACGAGACGCCCACGCAGCGGCCGTTCCAGGCGACGCACCCTGTCTTCCCCAAAGGCACG ACGCCGGTTCTCCTCGAGAAGATTGAACACCTCAAGAACCGTCTCGAGTTCTCGCAAGAA GTCGAGATGGTTGAGGCTTGA
  • Download Fasta

  • Fasta :-

    MDSIAQLALQRGGYDFSNHQRNVRLLMDAAKRCPSSAGSPTPPGLPPARKTGTTICGVVC NGAVVLGADTRATEGTIVADKNCSKLHRIADNMYAAGAGTAADLDHMCDWLAVQVELHRL NTNAQPRVSMAVSVLSQELFKYQGYKGCAVVLGGVDFKGPHIYKIHPHGSTDCSNFAAMG SGSLNAMAILEAGYKDGMTLEEGKALVCDAIKAGVLNDLGSGGNIDLCIITREGAQHIRQ YETPTQRPFQATHPVFPKGTTPVLLEKIEHLKNRLEFSQEVEMVEA

  • title: active site
  • coordinates: T53,D69,R71,K85,S181,D218,S221,G222
No Results
No Results
No Results

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India