NCLIV_055460 | conserved hypothetical protein

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0005515      

  • Computed_GO_Functions:  protein binding      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
NCLIV_055460OTHER0.9999390.0000320.000029
No Results

  • Fasta :-

    >NCLIV_055460 MAASQDFQNEVIPPLSQQDKDRRWAVQLRVYDLSKGMARQMSPMLLGRQIDGIWHTGIVV YGIEYFYGGGVCTLPPEEVERNYHMQPERVLTMGFTTVDKATFDAFVQQISPRFTMATYD LLNWNCNHFTTELTQYLLNKPIPDYIRFQVQEVAQTPTGRTILLMLQRQQQEVQRTAAGM GQRTLWTQGGSPQALASPAAETFSAPDISSPLANVLRSVCTSGELVRSTKKVFLLTLLTL VSNLLKPERDPKFLRLRRSNEVIQSKILRIPNGQQALELLGFELQTGEQPVGTEAGASDT TARGEAGGADDEFVFTLFNDSSSEASVVEKLTAQKAEIQAFLDALESAGASGAAAPQAAS NQGRGVQGGAAQAPEERFRFQLQQLEAMGFVETQKNVEALEAVNGNLNAAIDRLLG
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NCLIV_055460.fa Sequence name : NCLIV_055460 Sequence length : 416 VALUES OF COMPUTED PARAMETERS Coef20 : 3.145 CoefTot : 0.239 ChDiff : -9 ZoneTo : 5 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.024 1.388 0.230 0.624 MesoH : -0.239 0.288 -0.292 0.193 MuHd_075 : 16.850 19.661 5.472 4.884 MuHd_095 : 27.691 20.787 8.307 4.987 MuHd_100 : 23.367 15.737 5.860 3.680 MuHd_105 : 16.397 10.252 3.057 2.263 Hmax_075 : 9.100 10.800 0.720 3.910 Hmax_095 : 10.300 12.800 1.076 4.390 Hmax_100 : 7.000 6.700 -0.346 3.110 Hmax_105 : 4.112 2.887 -2.005 1.995 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8689 0.1311 DFMC : 0.9520 0.0480
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 416 NCLIV_055460 MAASQDFQNEVIPPLSQQDKDRRWAVQLRVYDLSKGMARQMSPMLLGRQIDGIWHTGIVVYGIEYFYGGGVCTLPPEEVE 80 RNYHMQPERVLTMGFTTVDKATFDAFVQQISPRFTMATYDLLNWNCNHFTTELTQYLLNKPIPDYIRFQVQEVAQTPTGR 160 TILLMLQRQQQEVQRTAAGMGQRTLWTQGGSPQALASPAAETFSAPDISSPLANVLRSVCTSGELVRSTKKVFLLTLLTL 240 VSNLLKPERDPKFLRLRRSNEVIQSKILRIPNGQQALELLGFELQTGEQPVGTEAGASDTTARGEAGGADDEFVFTLFND 320 SSSEASVVEKLTAQKAEIQAFLDALESAGASGAAAPQAASNQGRGVQGGAAQAPEERFRFQLQQLEAMGFVETQKNVEAL 400 EAVNGNLNAAIDRLLG 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 .................P.............................................................. 320 ................................................................................ 400 ................ 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ NCLIV_055460 20 PLSQQDK|DR 0.083 . NCLIV_055460 22 SQQDKDR|RW 0.130 . NCLIV_055460 23 QQDKDRR|WA 0.151 . NCLIV_055460 29 RWAVQLR|VY 0.100 . NCLIV_055460 35 RVYDLSK|GM 0.062 . NCLIV_055460 39 LSKGMAR|QM 0.118 . NCLIV_055460 48 SPMLLGR|QI 0.165 . NCLIV_055460 81 PPEEVER|NY 0.100 . NCLIV_055460 89 YHMQPER|VL 0.110 . NCLIV_055460 100 GFTTVDK|AT 0.073 . NCLIV_055460 113 VQQISPR|FT 0.128 . NCLIV_055460 140 TQYLLNK|PI 0.078 . NCLIV_055460 147 PIPDYIR|FQ 0.087 . NCLIV_055460 160 AQTPTGR|TI 0.082 . NCLIV_055460 168 ILLMLQR|QQ 0.093 . NCLIV_055460 175 QQQEVQR|TA 0.105 . NCLIV_055460 183 AAGMGQR|TL 0.105 . NCLIV_055460 217 PLANVLR|SV 0.296 . NCLIV_055460 227 TSGELVR|ST 0.167 . NCLIV_055460 230 ELVRSTK|KV 0.125 . NCLIV_055460 231 LVRSTKK|VF 0.072 . NCLIV_055460 246 LVSNLLK|PE 0.058 . NCLIV_055460 249 NLLKPER|DP 0.074 . NCLIV_055460 252 KPERDPK|FL 0.132 . NCLIV_055460 255 RDPKFLR|LR 0.079 . NCLIV_055460 257 PKFLRLR|RS 0.084 . NCLIV_055460 258 KFLRLRR|SN 0.586 *ProP* NCLIV_055460 266 NEVIQSK|IL 0.064 . NCLIV_055460 269 IQSKILR|IP 0.109 . NCLIV_055460 303 ASDTTAR|GE 0.111 . NCLIV_055460 330 EASVVEK|LT 0.076 . NCLIV_055460 335 EKLTAQK|AE 0.061 . NCLIV_055460 364 AASNQGR|GV 0.285 . NCLIV_055460 377 AQAPEER|FR 0.096 . NCLIV_055460 379 APEERFR|FQ 0.126 . NCLIV_055460 395 GFVETQK|NV 0.085 . NCLIV_055460 413 LNAAIDR|LL 0.103 . ____________________________^_________________

  • Fasta :-

    >NCLIV_055460 ATGGCCGCGTCTCAGGACTTTCAAAACGAAGTCATCCCGCCTCTCTCCCAGCAAGACAAA GACCGCAGATGGGCTGTCCAGCTCCGCGTCTACGACCTCTCCAAAGGAATGGCCCGGCAG ATGTCGCCGATGCTTCTGGGGAGGCAGATCGACGGCATCTGGCACACAGGCATCGTCGTA TATGGAATCGAGTATTTCTACGGAGGCGGCGTGTGCACTCTTCCTCCCGAGGAAGTTGAA CGAAACTACCACATGCAGCCAGAGCGCGTTCTCACCATGGGGTTTACCACCGTCGATAAG GCGACATTCGACGCATTCGTCCAGCAGATTTCGCCTCGGTTTACGATGGCAACCTACGAT CTTCTGAACTGGAACTGTAATCACTTTACGACAGAGCTGACGCAGTATCTCCTCAACAAA CCCATTCCGGACTACATTCGGTTTCAGGTCCAGGAAGTGGCGCAGACGCCGACGGGGCGG ACGATTCTTCTGATGCTCCAACGCCAGCAGCAAGAAGTGCAGCGCACTGCCGCTGGGATG GGCCAGCGAACGCTGTGGACGCAGGGCGGGTCTCCGCAGGCTCTCGCTTCCCCTGCTGCC GAGACCTTCTCAGCGCCCGACATTTCCAGTCCGTTGGCGAATGTTCTGCGCAGTGTGTGC ACCAGCGGCGAATTGGTCCGGAGCACCAAGAAGGTGTTCTTGTTGACTCTGCTGACTCTG GTGAGCAACTTGTTGAAGCCGGAGCGCGACCCCAAGTTCCTGCGCCTCCGCCGAAGCAAC GAAGTCATCCAGTCGAAAATTCTGCGGATCCCAAACGGCCAACAAGCTTTGGAGCTGCTC GGGTTCGAGCTGCAGACAGGCGAGCAGCCCGTCGGAACGGAGGCTGGGGCGTCGGACACG ACAGCCCGAGGAGAGGCAGGCGGTGCCGACGACGAGTTTGTCTTCACCCTGTTCAATGAC TCTTCGTCAGAGGCGAGCGTGGTGGAGAAGTTGACCGCGCAGAAAGCGGAGATCCAGGCG TTCCTCGACGCTCTGGAGAGCGCTGGAGCCAGTGGCGCCGCCGCTCCACAGGCTGCTTCG AATCAAGGACGCGGTGTCCAGGGCGGGGCGGCACAAGCCCCCGAGGAAAGATTCCGATTT CAGCTGCAACAGCTCGAGGCGATGGGGTTTGTAGAGACCCAGAAAAACGTCGAAGCCTTG GAAGCAGTAAATGGAAACCTGAACGCAGCGATCGATCGCCTTCTCGGCTGA
  • Download Fasta

  • Fasta :-

    MAASQDFQNEVIPPLSQQDKDRRWAVQLRVYDLSKGMARQMSPMLLGRQIDGIWHTGIVV YGIEYFYGGGVCTLPPEEVERNYHMQPERVLTMGFTTVDKATFDAFVQQISPRFTMATYD LLNWNCNHFTTELTQYLLNKPIPDYIRFQVQEVAQTPTGRTILLMLQRQQQEVQRTAAGM GQRTLWTQGGSPQALASPAAETFSAPDISSPLANVLRSVCTSGELVRSTKKVFLLTLLTL VSNLLKPERDPKFLRLRRSNEVIQSKILRIPNGQQALELLGFELQTGEQPVGTEAGASDT TARGEAGGADDEFVFTLFNDSSSEASVVEKLTAQKAEIQAFLDALESAGASGAAAPQAAS NQGRGVQGGAAQAPEERFRFQLQQLEAMGFVETQKNVEALEAVNGNLNAAIDRLLG

  • title: polypeptide substrate binding site
  • coordinates: A387,M388,G389,F390,V391,E392,N408,I411,D412,R413,L415,G416
No Results
No Results
IDSitePeptideScoreMethod
NCLIV_055460321 SLFNDSSSEA0.99unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India