NCLIV_059250 | Derlin-1, related

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_IDPredictionOTHERSPmTPCS_Position
NCLIV_059250OTHER0.9997340.0002200.000047
No Results

  • Fasta :-

    >NCLIV_059250 MAQIDIFFSHLPPVTRFYLFCSTALMLLCTLEIVSPFSLYINYNLVVQRGQLWRIFSCFL FFGTFSLHFFWNVYVLIFYCATLEEHQKSAAFLWMLITTGALLLGLSYLFGVSSYFFSGS MINVMTYIWGRRNPSTRLSVFFISVSAPYLPFVLALMSVLVGWSIADHAIGILVGHVYYF FEDIYPLLPTSKGRRFFRTPRMLLWLFRESAD
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NCLIV_059250.fa Sequence name : NCLIV_059250 Sequence length : 212 VALUES OF COMPUTED PARAMETERS Coef20 : 4.048 CoefTot : -0.774 ChDiff : 4 ZoneTo : 83 KR : 3 DE : 2 CleavSite : 64 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.288 2.124 0.377 0.786 MesoH : 1.221 1.161 0.043 0.541 MuHd_075 : 34.183 24.726 8.363 8.608 MuHd_095 : 21.293 16.887 6.612 5.130 MuHd_100 : 25.287 16.681 6.770 5.921 MuHd_105 : 27.078 19.608 7.450 7.113 Hmax_075 : 14.400 15.900 2.059 6.250 Hmax_095 : 14.600 18.200 4.366 6.589 Hmax_100 : 16.600 16.100 4.079 6.990 Hmax_105 : 18.600 18.700 4.429 6.900 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.6545 0.3455 DFMC : 0.5197 0.4803
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 212 NCLIV_059250 MAQIDIFFSHLPPVTRFYLFCSTALMLLCTLEIVSPFSLYINYNLVVQRGQLWRIFSCFLFFGTFSLHFFWNVYVLIFYC 80 ATLEEHQKSAAFLWMLITTGALLLGLSYLFGVSSYFFSGSMINVMTYIWGRRNPSTRLSVFFISVSAPYLPFVLALMSVL 160 VGWSIADHAIGILVGHVYYFFEDIYPLLPTSKGRRFFRTPRMLLWLFRESAD 240 ................................................................................ 80 ................................................................................ 160 .................................................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ NCLIV_059250 16 HLPPVTR|FY 0.081 . NCLIV_059250 49 YNLVVQR|GQ 0.087 . NCLIV_059250 54 QRGQLWR|IF 0.117 . NCLIV_059250 88 TLEEHQK|SA 0.081 . NCLIV_059250 131 MTYIWGR|RN 0.074 . NCLIV_059250 132 TYIWGRR|NP 0.122 . NCLIV_059250 137 RRNPSTR|LS 0.101 . NCLIV_059250 192 PLLPTSK|GR 0.055 . NCLIV_059250 194 LPTSKGR|RF 0.101 . NCLIV_059250 195 PTSKGRR|FF 0.175 . NCLIV_059250 198 KGRRFFR|TP 0.276 . NCLIV_059250 201 RFFRTPR|ML 0.210 . NCLIV_059250 208 MLLWLFR|ES 0.090 . ____________________________^_________________

  • Fasta :-

    >NCLIV_059250 ATGGCCCAAATCGACATCTTCTTCTCGCACCTGCCTCCTGTCACGCGCTTCTACCTGTTT TGCTCGACGGCGCTGATGCTCCTGTGCACCCTCGAGATCGTCTCGCCCTTCTCGCTGTAC ATCAACTACAACCTAGTCGTCCAACGCGGCCAGCTCTGGCGAATCTTCTCGTGCTTCCTC TTCTTCGGAACCTTCTCTCTCCACTTCTTCTGGAACGTCTACGTCTTGATTTTCTACTGC GCAACTCTCGAAGAGCACCAGAAGAGCGCCGCCTTCCTCTGGATGCTCATCACCACCGGC GCTCTCCTCCTGGGCCTTTCGTACCTCTTTGGCGTCAGTTCCTACTTCTTCAGTGGGTCC ATGATCAACGTGATGACCTACATTTGGGGCCGAAGAAATCCGAGCACGCGACTCTCTGTC TTCTTCATCTCCGTCAGTGCGCCGTATCTACCCTTTGTCCTCGCCCTCATGTCTGTGTTG GTGGGGTGGAGCATTGCGGACCACGCGATCGGCATCCTCGTGGGGCATGTGTACTACTTC TTCGAGGACATCTACCCTCTTCTGCCGACAAGCAAGGGTCGGCGGTTCTTCCGAACGCCG CGCATGCTTCTCTGGCTCTTCCGAGAGAGTGCAGACTGA
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  • Fasta :-

    MAQIDIFFSHLPPVTRFYLFCSTALMLLCTLEIVSPFSLYINYNLVVQRGQLWRIFSCFL FFGTFSLHFFWNVYVLIFYCATLEEHQKSAAFLWMLITTGALLLGLSYLFGVSSYFFSGS MINVMTYIWGRRNPSTRLSVFFISVSAPYLPFVLALMSVLVGWSIADHAIGILVGHVYYF FEDIYPLLPTSKGRRFFRTPRMLLWLFRESAD

    No Results
No Results
No Results
IDSitePeptideScoreMethod
NCLIV_059250135 SRRNPSTRLS0.99unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India