NCLIV_059790 | putative proteasome subunit alpha type 3

_IDPredictionOTHERSPmTPCS_Position
NCLIV_059790OTHER0.9999080.0000810.000011
No Results

  • Fasta :-

    >NCLIV_059790 MAGTGSGYDLSVSTFSPDGRVFQVEYAGKAVDNSGLCMAVVCQDGILFAVEKPKPSPLLL PTCLRRIAAVTETIGIAVAGLAADGRQIVTRARQEAEEYKKTFGVEISGGVLAERIGLFM HAYSLYWSVRPFGASVLIGAVQQERGEPGAPLQFKGELYCVDTSGCCSKYRATALGKGRP SAKTELEKLDLETLTTKEALEALTKIFLVVDDEGSKEGKVEVEVGLIGNDSCGVFKMLPS EEVRAAVKRAREALDEMDED
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NCLIV_059790.fa Sequence name : NCLIV_059790 Sequence length : 260 VALUES OF COMPUTED PARAMETERS Coef20 : 3.457 CoefTot : -0.654 ChDiff : -8 ZoneTo : 8 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.359 1.812 0.304 0.667 MesoH : -0.345 0.636 -0.211 0.257 MuHd_075 : 24.042 13.670 5.256 3.340 MuHd_095 : 8.604 4.132 2.025 1.396 MuHd_100 : 3.994 5.301 0.524 1.343 MuHd_105 : 4.038 4.615 1.041 1.078 Hmax_075 : 14.817 7.700 1.335 3.722 Hmax_095 : 11.800 5.700 0.880 3.450 Hmax_100 : 11.800 5.700 0.856 3.450 Hmax_105 : 8.167 5.500 0.380 3.400 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9856 0.0144 DFMC : 0.9796 0.0204
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 260 NCLIV_059790 MAGTGSGYDLSVSTFSPDGRVFQVEYAGKAVDNSGLCMAVVCQDGILFAVEKPKPSPLLLPTCLRRIAAVTETIGIAVAG 80 LAADGRQIVTRARQEAEEYKKTFGVEISGGVLAERIGLFMHAYSLYWSVRPFGASVLIGAVQQERGEPGAPLQFKGELYC 160 VDTSGCCSKYRATALGKGRPSAKTELEKLDLETLTTKEALEALTKIFLVVDDEGSKEGKVEVEVGLIGNDSCGVFKMLPS 240 EEVRAAVKRAREALDEMDED 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 .................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ NCLIV_059790 20 TFSPDGR|VF 0.098 . NCLIV_059790 29 QVEYAGK|AV 0.086 . NCLIV_059790 52 ILFAVEK|PK 0.058 . NCLIV_059790 54 FAVEKPK|PS 0.067 . NCLIV_059790 65 LLPTCLR|RI 0.089 . NCLIV_059790 66 LPTCLRR|IA 0.147 . NCLIV_059790 86 GLAADGR|QI 0.101 . NCLIV_059790 91 GRQIVTR|AR 0.140 . NCLIV_059790 93 QIVTRAR|QE 0.079 . NCLIV_059790 100 QEAEEYK|KT 0.079 . NCLIV_059790 101 EAEEYKK|TF 0.110 . NCLIV_059790 115 GGVLAER|IG 0.067 . NCLIV_059790 130 SLYWSVR|PF 0.135 . NCLIV_059790 145 GAVQQER|GE 0.088 . NCLIV_059790 155 GAPLQFK|GE 0.070 . NCLIV_059790 169 TSGCCSK|YR 0.081 . NCLIV_059790 171 GCCSKYR|AT 0.102 . NCLIV_059790 177 RATALGK|GR 0.059 . NCLIV_059790 179 TALGKGR|PS 0.097 . NCLIV_059790 183 KGRPSAK|TE 0.069 . NCLIV_059790 188 AKTELEK|LD 0.060 . NCLIV_059790 197 LETLTTK|EA 0.062 . NCLIV_059790 205 ALEALTK|IF 0.059 . NCLIV_059790 216 VDDEGSK|EG 0.052 . NCLIV_059790 219 EGSKEGK|VE 0.063 . NCLIV_059790 236 DSCGVFK|ML 0.069 . NCLIV_059790 244 LPSEEVR|AA 0.111 . NCLIV_059790 248 EVRAAVK|RA 0.072 . NCLIV_059790 249 VRAAVKR|AR 0.281 . NCLIV_059790 251 AAVKRAR|EA 0.126 . ____________________________^_________________

  • Fasta :-

    >NCLIV_059790 ATGGCTGGGACAGGGTCTGGGTACGACCTCTCCGTCTCCACTTTTTCTCCAGATGGACGT GTTTTCCAGGTGGAGTACGCGGGGAAAGCGGTAGACAACAGCGGCCTGTGCATGGCTGTT GTGTGCCAAGATGGCATTCTCTTTGCCGTGGAGAAGCCCAAGCCGTCTCCGCTTCTCCTC CCTACGTGTCTCCGAAGAATCGCCGCTGTCACGGAAACTATCGGAATCGCTGTGGCGGGA TTGGCGGCAGACGGCCGGCAGATTGTCACGCGAGCTCGCCAAGAGGCCGAAGAATACAAG AAAACGTTCGGAGTAGAGATCAGCGGCGGCGTTCTGGCCGAGCGCATTGGTCTCTTTATG CATGCCTATTCTCTCTACTGGAGTGTCCGACCTTTCGGCGCCTCCGTCCTCATCGGCGCG GTCCAGCAAGAGCGAGGCGAACCTGGAGCGCCGCTCCAGTTTAAGGGCGAGCTGTACTGC GTCGACACGAGTGGGTGTTGCAGCAAGTACCGGGCGACTGCGCTCGGCAAGGGACGGCCG TCAGCCAAGACCGAACTGGAGAAGCTGGACCTGGAGACGCTGACGACGAAGGAGGCTCTG GAGGCTCTCACGAAGATTTTCCTGGTTGTTGACGACGAGGGAAGCAAGGAAGGGAAAGTG GAGGTCGAAGTAGGTCTGATCGGAAACGACAGCTGCGGGGTCTTCAAGATGCTGCCGTCC GAAGAAGTCCGCGCGGCCGTCAAACGCGCGAGGGAAGCTCTCGACGAAATGGACGAGGAT TAA
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  • Fasta :-

    MAGTGSGYDLSVSTFSPDGRVFQVEYAGKAVDNSGLCMAVVCQDGILFAVEKPKPSPLLL PTCLRRIAAVTETIGIAVAGLAADGRQIVTRARQEAEEYKKTFGVEISGGVLAERIGLFM HAYSLYWSVRPFGASVLIGAVQQERGEPGAPLQFKGELYCVDTSGCCSKYRATALGKGRP SAKTELEKLDLETLTTKEALEALTKIFLVVDDEGSKEGKVEVEVGLIGNDSCGVFKMLPS EEVRAAVKRAREALDEMDED

  • title: active site
  • coordinates: G35,E51,P53,R66
No Results
No Results
IDSitePeptideScoreMethod
NCLIV_059790181 SKGRPSAKTE0.995unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India