NCLIV_062860 | hypothetical protein

  • Computed_GO_Component_IDs:  GO:0016021      

  • Computed_GO_Components:  integral component of membrane      

  • Computed_GO_Function_IDs:  GO:0004252      

  • Computed_GO_Functions:  serine-type endopeptidase activity      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
NCLIV_062860OTHER0.9998100.0000040.000186
No Results

  • Fasta :-

    >NCLIV_062860 MCSPYAPTAFSPGTPSSGLASASSFSSAASCPSGGSPSPALCSTLLFRSFPRFSGRFSRS RLGSEQKKRKTEEHDGATDFDSGPLSSGSIFTVIVGSLLLFDILRSDLYEHRKLLGAFLL TNAAVFTGWRAATAAGSELWQTFFMRNFVLCRETLTGARLHTFLTSCLSHKNTSHLIFNL FVINQLFRLLSVDLSDGDFLSLFGLAALCGGFGHLLVSSRPVLGASAFAYALLWTEATLH SREMFRILPIPFFPVTALQLVQVAMCIEAGMAFLARRVMLARFPSSPLLRFAQGISWSGH LGGLAAGCLYSWYKRRVEGDRSWQGFWGLCRTYGKSDWRFTWQDLKTSTTIFLLECKILL ATSDMERTVIIRHLDKLRLQKELRRQAIARGGICP
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NCLIV_062860.fa Sequence name : NCLIV_062860 Sequence length : 395 VALUES OF COMPUTED PARAMETERS Coef20 : 3.558 CoefTot : 0.719 ChDiff : 16 ZoneTo : 64 KR : 5 DE : 0 CleavSite : 63 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.094 2.124 0.382 0.756 MesoH : 0.710 1.098 -0.029 0.451 MuHd_075 : 29.488 19.789 6.286 8.221 MuHd_095 : 54.837 27.820 12.561 11.898 MuHd_100 : 52.813 24.654 10.689 11.359 MuHd_105 : 45.861 18.299 8.450 9.541 Hmax_075 : 14.100 13.600 2.458 5.060 Hmax_095 : 19.300 17.700 4.214 5.910 Hmax_100 : 18.800 13.400 3.472 5.540 Hmax_105 : 13.300 4.638 0.509 3.310 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0104 0.9896 DFMC : 0.0091 0.9909 This protein is probably imported in chloroplast. f(Ser) = 0.2969 f(Arg) = 0.0781 CMi = 1.65505 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 395 NCLIV_062860 MCSPYAPTAFSPGTPSSGLASASSFSSAASCPSGGSPSPALCSTLLFRSFPRFSGRFSRSRLGSEQKKRKTEEHDGATDF 80 DSGPLSSGSIFTVIVGSLLLFDILRSDLYEHRKLLGAFLLTNAAVFTGWRAATAAGSELWQTFFMRNFVLCRETLTGARL 160 HTFLTSCLSHKNTSHLIFNLFVINQLFRLLSVDLSDGDFLSLFGLAALCGGFGHLLVSSRPVLGASAFAYALLWTEATLH 240 SREMFRILPIPFFPVTALQLVQVAMCIEAGMAFLARRVMLARFPSSPLLRFAQGISWSGHLGGLAAGCLYSWYKRRVEGD 320 RSWQGFWGLCRTYGKSDWRFTWQDLKTSTTIFLLECKILLATSDMERTVIIRHLDKLRLQKELRRQAIARGGICP 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ........................................................................... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ NCLIV_062860 48 CSTLLFR|SF 0.088 . NCLIV_062860 52 LFRSFPR|FS 0.112 . NCLIV_062860 56 FPRFSGR|FS 0.135 . NCLIV_062860 59 FSGRFSR|SR 0.491 . NCLIV_062860 61 GRFSRSR|LG 0.092 . NCLIV_062860 67 RLGSEQK|KR 0.067 . NCLIV_062860 68 LGSEQKK|RK 0.111 . NCLIV_062860 69 GSEQKKR|KT 0.275 . NCLIV_062860 70 SEQKKRK|TE 0.110 . NCLIV_062860 105 LLFDILR|SD 0.083 . NCLIV_062860 112 SDLYEHR|KL 0.078 . NCLIV_062860 113 DLYEHRK|LL 0.101 . NCLIV_062860 130 AVFTGWR|AA 0.100 . NCLIV_062860 146 WQTFFMR|NF 0.089 . NCLIV_062860 152 RNFVLCR|ET 0.095 . NCLIV_062860 159 ETLTGAR|LH 0.063 . NCLIV_062860 171 TSCLSHK|NT 0.078 . NCLIV_062860 188 VINQLFR|LL 0.092 . NCLIV_062860 220 HLLVSSR|PV 0.098 . NCLIV_062860 242 EATLHSR|EM 0.086 . NCLIV_062860 246 HSREMFR|IL 0.088 . NCLIV_062860 276 GMAFLAR|RV 0.137 . NCLIV_062860 277 MAFLARR|VM 0.110 . NCLIV_062860 282 RRVMLAR|FP 0.109 . NCLIV_062860 290 PSSPLLR|FA 0.151 . NCLIV_062860 314 CLYSWYK|RR 0.060 . NCLIV_062860 315 LYSWYKR|RV 0.326 . NCLIV_062860 316 YSWYKRR|VE 0.161 . NCLIV_062860 321 RRVEGDR|SW 0.123 . NCLIV_062860 331 GFWGLCR|TY 0.098 . NCLIV_062860 335 LCRTYGK|SD 0.078 . NCLIV_062860 339 YGKSDWR|FT 0.119 . NCLIV_062860 346 FTWQDLK|TS 0.058 . NCLIV_062860 357 IFLLECK|IL 0.056 . NCLIV_062860 367 ATSDMER|TV 0.100 . NCLIV_062860 372 ERTVIIR|HL 0.114 . NCLIV_062860 376 IIRHLDK|LR 0.060 . NCLIV_062860 378 RHLDKLR|LQ 0.077 . NCLIV_062860 381 DKLRLQK|EL 0.106 . NCLIV_062860 384 RLQKELR|RQ 0.087 . NCLIV_062860 385 LQKELRR|QA 0.139 . NCLIV_062860 390 RRQAIAR|GG 0.121 . ____________________________^_________________

  • Fasta :-

    >NCLIV_062860 ATGTGCTCTCCTTATGCTCCTACTGCGTTCTCTCCGGGCACTCCGTCCTCTGGCCTTGCC TCGGCGTCTTCATTCTCTTCGGCCGCGTCTTGTCCCTCGGGTGGATCTCCTTCGCCTGCC TTGTGTTCCACGCTCCTGTTTCGGTCCTTTCCTCGTTTTTCCGGCCGTTTCTCGAGGAGC CGACTTGGTAGCGAGCAGAAGAAGCGAAAAACCGAGGAGCACGACGGCGCGACCGATTTT GACAGTGGCCCACTCTCAAGCGGATCTATCTTTACGGTCATTGTTGGCTCGCTGCTCCTC TTTGATATCCTGAGGAGTGATCTGTACGAACACCGGAAGCTTCTCGGGGCGTTTTTGCTG ACTAACGCGGCTGTCTTCACAGGCTGGCGTGCCGCCACCGCCGCAGGGAGCGAACTTTGG CAGACTTTCTTCATGCGCAATTTCGTTCTCTGCCGTGAAACCCTCACCGGCGCGCGCCTG CACACTTTCCTCACTTCATGTTTAAGCCACAAGAACACAAGTCACTTGATTTTCAATCTG TTCGTGATCAACCAGCTCTTTCGCCTCCTTTCCGTCGACCTGTCGGACGGTGACTTCCTC TCTCTCTTTGGACTCGCCGCCCTATGTGGAGGCTTCGGCCACCTTCTCGTGTCGAGCCGG CCAGTTCTCGGCGCCTCTGCTTTCGCCTACGCCCTTCTTTGGACTGAGGCAACTCTCCAC TCACGAGAGATGTTCCGAATTCTTCCGATTCCGTTTTTCCCAGTCACCGCACTGCAGCTT GTGCAAGTCGCGATGTGCATCGAGGCGGGGATGGCGTTCCTCGCCCGACGGGTGATGCTG GCGCGTTTCCCCTCTTCCCCGCTTCTTCGCTTCGCTCAAGGCATCTCGTGGTCGGGGCAC CTTGGCGGCCTGGCTGCCGGCTGTCTGTACAGCTGGTATAAACGGCGAGTCGAAGGCGAC CGGTCGTGGCAGGGGTTCTGGGGACTCTGTAGGACGTACGGAAAGTCGGACTGGCGTTTC ACGTGGCAAGATCTGAAGACGTCCACAACGATCTTTCTCCTCGAGTGTAAAATCTTGTTG GCGACGTCGGACATGGAACGCACCGTCATCATCCGACACCTCGACAAGTTGCGGCTGCAG AAGGAGCTACGGCGTCAGGCGATCGCGCGCGGCGGGATTTGCCCATGA
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  • Fasta :-

    MCSPYAPTAFSPGTPSSGLASASSFSSAASCPSGGSPSPALCSTLLFRSFPRFSGRFSRS RLGSEQKKRKTEEHDGATDFDSGPLSSGSIFTVIVGSLLLFDILRSDLYEHRKLLGAFLL TNAAVFTGWRAATAAGSELWQTFFMRNFVLCRETLTGARLHTFLTSCLSHKNTSHLIFNL FVINQLFRLLSVDLSDGDFLSLFGLAALCGGFGHLLVSSRPVLGASAFAYALLWTEATLH SREMFRILPIPFFPVTALQLVQVAMCIEAGMAFLARRVMLARFPSSPLLRFAQGISWSGH LGGLAAGCLYSWYKRRVEGDRSWQGFWGLCRTYGKSDWRFTWQDLKTSTTIFLLECKILL ATSDMERTVIIRHLDKLRLQKELRRQAIARGGICP

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
NCLIV_06286054 SFPRFSGRFS0.994unspNCLIV_06286058 SSGRFSRSRL0.994unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India