NCLIV_065750 | Alpha 2 subunit of 20S proteasome (ISS), related

UniProt_ID: F0VR02

Computed_GO_Component_IDs: GO:0005839 GO:0019773
Computed_GO_Components: proteasome core complex proteasome core complex, alpha-subunit complex
Computed_GO_Function_IDs: GO:0004175 GO:0004298
Computed_GO_Functions: endopeptidase activity threonine-type endopeptidase activity
Computed_GO_Process_IDs: GO:0051603 GO:0006511
Computed_GO_Processes: proteolysis involved in cellular protein catabolic process ubiquitin-dependent protein catabolic process
Curated_GO_Component_IDs:
Curated_GO_Components:
Curated_GO_Function_IDs:
Curated_GO_Functions:
Curated_GO_Processes:

	_ID	Prediction	OTHER	SP	mTP	CS_Position
	NCLIV_065750	OTHER	0.999703	0.000115	0.000183

No Results

Fasta :-
>NCLIV_065750 MFSTRSEYDRGVNTFSPEGRLFQVEYALGAIKLGSTAVGIQTKDGVILASERRITSCLLD HQSIQKIVEIDDHIACAMSGLIADARTLIDHARVECANHFFTYNEKMSIHSCIDSVADLA LDFSDVSDGRRKKMMSRPFGVALLVAGVDDQGPSLWCADPSGTVTKYQAVALGSAQEGAE TMLQEQYSQSMSFEDAEALVLVVLRQVMEEKLNCNNVEVACVKTSDRKYHQYSSEELQVL IDRLPAPTIPTATDLSSA
Download Fasta

MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NCLIV_065750.fa Sequence name : NCLIV_065750 Sequence length : 258 VALUES OF COMPUTED PARAMETERS Coef20 : 3.827 CoefTot : 0.359 ChDiff : -13 ZoneTo : 6 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.682 1.229 -0.007 0.488 MesoH : -0.547 0.397 -0.365 0.198 MuHd_075 : 26.581 14.114 5.973 6.050 MuHd_095 : 22.151 12.185 5.897 4.710 MuHd_100 : 16.896 13.422 4.329 4.470 MuHd_105 : 11.946 13.520 3.115 4.358 Hmax_075 : 3.063 1.575 -1.476 2.135 Hmax_095 : 11.800 5.700 0.856 3.450 Hmax_100 : 3.000 3.000 -1.467 2.890 Hmax_105 : -5.775 2.400 -3.727 1.000 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.7811 0.2189 DFMC : 0.7920 0.2080

##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 258 NCLIV_065750 MFSTRSEYDRGVNTFSPEGRLFQVEYALGAIKLGSTAVGIQTKDGVILASERRITSCLLDHQSIQKIVEIDDHIACAMSG 80 LIADARTLIDHARVECANHFFTYNEKMSIHSCIDSVADLALDFSDVSDGRRKKMMSRPFGVALLVAGVDDQGPSLWCADP 160 SGTVTKYQAVALGSAQEGAETMLQEQYSQSMSFEDAEALVLVVLRQVMEEKLNCNNVEVACVKTSDRKYHQYSSEELQVL 240 IDRLPAPTIPTATDLSSA 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 .................. 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ NCLIV_065750 5 --MFSTR|SE 0.129 . NCLIV_065750 10 TRSEYDR|GV 0.202 . NCLIV_065750 20 TFSPEGR|LF 0.104 . NCLIV_065750 32 YALGAIK|LG 0.061 . NCLIV_065750 43 AVGIQTK|DG 0.061 . NCLIV_065750 52 VILASER|RI 0.075 . NCLIV_065750 53 ILASERR|IT 0.164 . NCLIV_065750 66 DHQSIQK|IV 0.077 . NCLIV_065750 86 GLIADAR|TL 0.102 . NCLIV_065750 93 TLIDHAR|VE 0.100 . NCLIV_065750 106 FFTYNEK|MS 0.056 . NCLIV_065750 130 SDVSDGR|RK 0.068 . NCLIV_065750 131 DVSDGRR|KK 0.134 . NCLIV_065750 132 VSDGRRK|KM 0.069 . NCLIV_065750 133 SDGRRKK|MM 0.362 . NCLIV_065750 137 RKKMMSR|PF 0.116 . NCLIV_065750 166 PSGTVTK|YQ 0.083 . NCLIV_065750 205 LVLVVLR|QV 0.104 . NCLIV_065750 211 RQVMEEK|LN 0.062 . NCLIV_065750 223 VEVACVK|TS 0.067 . NCLIV_065750 227 CVKTSDR|KY 0.087 . NCLIV_065750 228 VKTSDRK|YH 0.070 . NCLIV_065750 243 LQVLIDR|LP 0.075 . ____________________________^_________________

Fasta :-
>NCLIV_065750 ATGTTTTCCACCAGAAGCGAATACGATCGAGGTGTGAACACCTTTTCTCCGGAGGGCCGG CTGTTTCAAGTTGAGTATGCACTCGGTGCAATCAAGCTCGGCAGCACAGCTGTCGGCATC CAGACCAAAGATGGAGTCATTCTTGCCTCAGAAAGAAGGATCACCTCGTGCTTGTTGGAC CATCAATCGATTCAAAAGATCGTCGAAATCGATGACCACATTGCATGTGCCATGAGTGGA CTTATTGCCGATGCCAGGACTCTCATTGATCACGCCCGCGTGGAGTGTGCGAACCATTTC TTCACCTACAACGAAAAAATGTCCATTCACAGCTGCATCGATTCCGTCGCCGATCTCGCT CTAGATTTCTCCGATGTGAGCGATGGCCGCAGGAAGAAGATGATGAGCCGACCCTTTGGG GTGGCGCTTCTTGTCGCCGGCGTCGACGACCAAGGGCCCTCTCTGTGGTGTGCAGATCCG TCTGGCACTGTCACCAAGTACCAGGCTGTGGCTCTTGGCTCCGCCCAGGAAGGCGCCGAG ACAATGCTGCAGGAGCAGTACAGTCAGTCGATGAGTTTCGAAGATGCCGAGGCACTCGTT CTCGTCGTCCTGCGGCAAGTGATGGAGGAGAAACTCAACTGCAATAATGTCGAGGTCGCC TGCGTGAAAACGAGTGATCGCAAGTACCACCAGTATTCCTCGGAAGAGCTTCAGGTGTTG ATCGACCGGCTGCCAGCGCCGACAATCCCCACCGCTACCGATCTCTCGTCCGCGTAG
Download Fasta

Fasta :-

MFSTRSEYDRGVNTFSPEGRLFQVEYALGAIKLGSTAVGIQTKDGVILASERRITSCLLD HQSIQKIVEIDDHIACAMSGLIADARTLIDHARVECANHFFTYNEKMSIHSCIDSVADLA LDFSDVSDGRRKKMMSRPFGVALLVAGVDDQGPSLWCADPSGTVTKYQAVALGSAQEGAE TMLQEQYSQSMSFEDAEALVLVVLRQVMEEKLNCNNVEVACVKTSDRKYHQYSSEELQVL IDRLPAPTIPTATDLSSA

Proteasome subunits

title: active site
coordinates: S35,E51,R53,K66,S174

No Results

	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method
	NCLIV_065750	233 S	YHQYSSEEL	0.993	unsp	NCLIV_065750	233 S	YHQYSSEEL	0.993	unsp	NCLIV_065750	233 S	YHQYSSEEL	0.993	unsp	NCLIV_065750	111 S	MSIHSCIDS	0.994	unsp	NCLIV_065750	192 S	SQSMSFEDA	0.997	unsp

NCLIV_065750 | Alpha 2 subunit of 20S proteasome (ISS), related

ID's

UniProt_ID: F0VR02

GEO Functions

Computed_GO_Component_IDs: GO:0005839 GO:0019773

Computed_GO_Components: proteasome core complex proteasome core complex, alpha-subunit complex

Computed_GO_Function_IDs: GO:0004175 GO:0004298

Computed_GO_Functions: endopeptidase activity threonine-type endopeptidase activity

Computed_GO_Process_IDs: GO:0051603 GO:0006511

Computed_GO_Processes: proteolysis involved in cellular protein catabolic process ubiquitin-dependent protein catabolic process

Curated_GO_Component_IDs:

Curated_GO_Components:

Curated_GO_Function_IDs:

Curated_GO_Functions:

Curated_GO_Processes:

Subcellular Localization

Targetp

Signalp

Fasta :-

Mitoprot

ProPeptide Prediction

Sequence

Nucleotide sequence

Fasta :-

Protein sequence

Fasta :-

Domains

Proteasome subunits

Structure

Post Translational Modifications

N_Linked Glycosylation

O_Linked Glycosylation

Phosphorylation

Protein-Protein Interaction

String

Literature

PubMed

Google Scholar

Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India