NCLIV_067980 | Proteasome subunit alpha type

UniProt_ID: F0VRM6

Computed_GO_Component_IDs: GO:0005839 GO:0019773
Computed_GO_Components: proteasome core complex proteasome core complex, alpha-subunit complex
Computed_GO_Function_IDs: GO:0004175 GO:0004298
Computed_GO_Functions: endopeptidase activity threonine-type endopeptidase activity
Computed_GO_Process_IDs: GO:0051603 GO:0006511
Computed_GO_Processes: proteolysis involved in cellular protein catabolic process ubiquitin-dependent protein catabolic process
Curated_GO_Component_IDs:
Curated_GO_Components:
Curated_GO_Function_IDs:
Curated_GO_Functions:
Curated_GO_Processes:

	_ID	Prediction	OTHER	SP	mTP	CS_Position
	NCLIV_067980	OTHER	0.999904	0.000062	0.000034

No Results

Fasta :-
>NCLIV_067980 MYRNLYDTDCITWSPQGRIFQVEYAMEAVKQGTCCVGLRSDTHVVLCSLKRSVSKFAGHH QKLFKIDDHVGVAMSGITADAKVISNFMRNECFHHKYVYDAPIPVGRLVLMVADKSQANT QRSGKRPFGVGLLAAGFDDAGPHLFETCPSGNYFESYAMAFGARSQSSKTYLERNFESFP GLSPEELELHAMKALNASLAADAELTADTVSMAIVGKNQPWKELSLDEIQALLDKMNVEP SGEDVQM
Download Fasta

MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NCLIV_067980.fa Sequence name : NCLIV_067980 Sequence length : 247 VALUES OF COMPUTED PARAMETERS Coef20 : 3.877 CoefTot : -0.191 ChDiff : -6 ZoneTo : 6 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.435 1.188 0.116 0.500 MesoH : -0.741 0.192 -0.433 0.153 MuHd_075 : 31.865 19.464 9.225 7.082 MuHd_095 : 25.976 6.637 3.085 5.428 MuHd_100 : 22.592 6.221 2.299 4.685 MuHd_105 : 13.052 7.542 1.582 2.351 Hmax_075 : 12.133 11.433 3.149 4.445 Hmax_095 : 0.438 0.700 -1.072 2.573 Hmax_100 : 6.700 3.700 -0.875 2.380 Hmax_105 : -1.500 -2.100 -2.547 1.120 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.6017 0.3983 DFMC : 0.7408 0.2592

##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 247 NCLIV_067980 MYRNLYDTDCITWSPQGRIFQVEYAMEAVKQGTCCVGLRSDTHVVLCSLKRSVSKFAGHHQKLFKIDDHVGVAMSGITAD 80 AKVISNFMRNECFHHKYVYDAPIPVGRLVLMVADKSQANTQRSGKRPFGVGLLAAGFDDAGPHLFETCPSGNYFESYAMA 160 FGARSQSSKTYLERNFESFPGLSPEELELHAMKALNASLAADAELTADTVSMAIVGKNQPWKELSLDEIQALLDKMNVEP 240 SGEDVQM 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ....... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ NCLIV_067980 3 ----MYR|NL 0.088 . NCLIV_067980 18 TWSPQGR|IF 0.133 . NCLIV_067980 30 YAMEAVK|QG 0.058 . NCLIV_067980 39 TCCVGLR|SD 0.122 . NCLIV_067980 50 VVLCSLK|RS 0.053 . NCLIV_067980 51 VLCSLKR|SV 0.469 . NCLIV_067980 55 LKRSVSK|FA 0.121 . NCLIV_067980 62 FAGHHQK|LF 0.066 . NCLIV_067980 65 HHQKLFK|ID 0.082 . NCLIV_067980 82 GITADAK|VI 0.069 . NCLIV_067980 89 VISNFMR|NE 0.101 . NCLIV_067980 96 NECFHHK|YV 0.091 . NCLIV_067980 107 APIPVGR|LV 0.117 . NCLIV_067980 115 VLMVADK|SQ 0.074 . NCLIV_067980 122 SQANTQR|SG 0.134 . NCLIV_067980 125 NTQRSGK|RP 0.118 . NCLIV_067980 126 TQRSGKR|PF 0.276 . NCLIV_067980 164 AMAFGAR|SQ 0.138 . NCLIV_067980 169 ARSQSSK|TY 0.074 . NCLIV_067980 174 SKTYLER|NF 0.087 . NCLIV_067980 193 LELHAMK|AL 0.072 . NCLIV_067980 217 SMAIVGK|NQ 0.070 . NCLIV_067980 222 GKNQPWK|EL 0.085 . NCLIV_067980 235 IQALLDK|MN 0.053 . ____________________________^_________________

Fasta :-
>NCLIV_067980 ATGTATCGCAATCTGTACGACACGGACTGCATCACTTGGAGCCCTCAGGGGCGAATCTTC CAAGTCGAGTATGCCATGGAGGCGGTTAAACAAGGCACCTGCTGTGTCGGTCTCCGTTCC GATACTCACGTGGTTCTTTGCTCGCTCAAGCGCTCGGTCTCAAAATTCGCAGGCCACCAC CAGAAACTCTTCAAAATCGACGATCACGTGGGCGTGGCCATGTCGGGCATTACTGCAGAT GCAAAGGTGATAAGTAACTTTATGCGCAACGAGTGCTTCCATCACAAATACGTGTACGAC GCTCCGATCCCCGTCGGGCGTCTCGTCCTCATGGTTGCCGACAAGTCGCAAGCAAACACG CAAAGGAGCGGCAAACGCCCGTTCGGCGTCGGCCTCCTGGCCGCCGGCTTCGACGACGCA GGCCCGCACCTCTTCGAGACATGTCCCTCTGGAAATTATTTCGAATCCTACGCCATGGCG TTCGGCGCGCGATCCCAGTCCTCGAAAACCTACTTGGAGAGAAACTTCGAATCGTTCCCT GGACTTTCCCCCGAAGAGCTGGAACTCCACGCGATGAAGGCTCTGAACGCCTCCCTGGCT GCCGATGCTGAGTTGACAGCAGACACCGTTTCGATGGCGATTGTTGGAAAGAACCAGCCG TGGAAGGAATTGTCCCTTGATGAAATCCAAGCCCTCCTCGACAAGATGAATGTGGAGCCC AGTGGCGAAGACGTCCAGATGTGA
Download Fasta

Fasta :-

MYRNLYDTDCITWSPQGRIFQVEYAMEAVKQGTCCVGLRSDTHVVLCSLKRSVSKFAGHH QKLFKIDDHVGVAMSGITADAKVISNFMRNECFHHKYVYDAPIPVGRLVLMVADKSQANT QRSGKRPFGVGLLAAGFDDAGPHLFETCPSGNYFESYAMAFGARSQSSKTYLERNFESFP GLSPEELELHAMKALNASLAADAELTADTVSMAIVGKNQPWKELSLDEIQALLDKMNVEP SGEDVQM

Proteasome subunits

title: active site
coordinates: T33,L49,R51,K62,A163

No Results

	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method
	NCLIV_067980	241 S	NVEPSGEDV	0.994	unsp	NCLIV_067980	241 S	NVEPSGEDV	0.994	unsp	NCLIV_067980	241 S	NVEPSGEDV	0.994	unsp	NCLIV_067980	123 S	NTQRSGKRP	0.996	unsp	NCLIV_067980	183 S	FPGLSPEEL	0.997	unsp

NCLIV_067980 | Proteasome subunit alpha type

ID's

UniProt_ID: F0VRM6

GEO Functions

Computed_GO_Component_IDs: GO:0005839 GO:0019773

Computed_GO_Components: proteasome core complex proteasome core complex, alpha-subunit complex

Computed_GO_Function_IDs: GO:0004175 GO:0004298

Computed_GO_Functions: endopeptidase activity threonine-type endopeptidase activity

Computed_GO_Process_IDs: GO:0051603 GO:0006511

Computed_GO_Processes: proteolysis involved in cellular protein catabolic process ubiquitin-dependent protein catabolic process

Curated_GO_Component_IDs:

Curated_GO_Components:

Curated_GO_Function_IDs:

Curated_GO_Functions:

Curated_GO_Processes:

Subcellular Localization

Targetp

Signalp

Fasta :-

Mitoprot

ProPeptide Prediction

Sequence

Nucleotide sequence

Fasta :-

Protein sequence

Fasta :-

Domains

Proteasome subunits

Structure

Post Translational Modifications

N_Linked Glycosylation

O_Linked Glycosylation

Phosphorylation

Protein-Protein Interaction

String

Literature

PubMed

Google Scholar

Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India